1. Home
2. Research - List of research papers
3. List of research papers (past)

List of research papers (past)

2023 |2022 |2021 | 2020 | 2019 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 |

Below is a list of peer-reviewed English research articles.

• 2023

Akaji Y., Inoue T. (2023) Effect of soil temperature on the morphological and physiological traits of Kandelia obovata seedlings. Plant Ecology, DOI:10.1007/s11258-023-01325-1

Andoh K, Hidano A, Sakamoto Y, Sawai K, Arai N, Suda Y, Mine J, Oka T. (2023) Current research and future directions for realizing the ideal One-Health approach: A summary of key-informant interviews in Japan and a literature review. One Health, doi: 10.1016/j.onehlt.2022.100468.

Ando, H., Martín-Vélez, V., Tavecchia, G., Traveset, A., Jiménez-Martín, I., Igual, J. M., Martínez-Abraín, A., & Hervías-Parejo, S. (2023). Gulls contribute to olive seed dispersal within and among islands in a Mediterranean coastal area. Journal of Biogeography, 00, 1–9.

Ao H., Torimaru T., Akaji Y., Akada S., Matsuda Y., Kisanuki H. (2023) Free-proline and total flavonoid responses in leaves of Fagus crenata current-year seedlings to short-term soil drought stress. Sylwan, 167 (1):26-36.

Aoki, S., Ishihama F., Fukasawa K. (2023) Robustness of genetic diversity measures under spatial sampling and a new frequency-independent measure. PeerJ, 11:e16027. DOI: 10.7717/peerj.16027

Asargew M F, Masutomi Y, Kobayashi K, Aono M. (2024) Water stress changes the relationship between photosynthesis and stomatal conductance, Science of The Total Environment, 907(10), 167886

Blake, K., Kubo, T., Veríssimo, D. (2023). Measuring the effectiveness of value-framing and message valence on audience engagement across countries. Global Environmental Psychology, 1, Article e11181.

Bouchet V.M.P. , Seuront L., Tsujimoto A., Richirt J., Frontalini F., Tsuchiya M., Matsuba M., Nomaki H. (2023) Foraminifera and plastic pollution: Knowledge gaps and research opportunities. Environmental Pollution, 324(1), 121365.

Chan, Y.K.S., Affendi, Y.A., Ang, P., Baria-Rodriguez, M.V., Chen, A., Chui, A., Giyanto , Glue, M., Huang, H., Kuo, C.-Y., Kim, S.W., Lam, V., Lane, D., Lian, J.S., Lin, S., Lunn, Z., Nanola, C., Nguyen, L., Park, H.S., Sudharsono , Sutthacheep, M., Vo, S.T., Vibol, O., Waheed, Z., Yamano, H., Yeemin, T., Yong, E., Kimura, T., Tun, K., Chou, L.M., Huang, D. (2023) Decadal stability in coral cover could mask hidden changes on reefs in the East Asian Seas. Communications Biology, 6, 630.

Dang-Le, A.T., Toyama, H., Nguyen, XMA. et al. (2023) Garcinia phuongmaiensis, a new species of Garcinia sect. Xanthochymus (Clusiaceae) from central Vietnam. Kew Bull, 78, 189–195.

Diway B, Yiing L C , Wasli M E, Takeuchi Y. (2023) Forest structure and recovery in selectively logged forests in Sarawak, Malaysia. Tropics, 32(1): 1-14

Diway B., Yiing L C., Takeuchi Y., Wasli M E. (2023) Establishment of permanent sample plot network for monitoring the structure and growth of logged-over forests in Sarawak, Malaysia. THE MALAYSIAN FORESTER, VOLUME 86, NO. 1, 200 - 209.

Doi, H., Matsuoka, S., Matsuzaki, S.-i., Nagano, M., Sato, H., Yamanaka, H., Matsuhashi, S., Yamamoto, S., Minamoto, T., Araki, H., Ikeda, K., Kato, A., Kumei, K., Maki, N., Mitsuzuka, T., Takahara, T., Toki, K., Ueda, N., Watanabe, T., Yamazoe, K., Miya, M. (2023) Species traits and ecosystem characteristics affect species detection by eDNA metabarcoding in lake fish communities. Freshwater Biology, DOI: 10.1111/fwb.14107

Endo, T., Hirata, S., Hayama, Y. et al. (2023) Landscape elements affecting the ingestion of oral vaccine against classical swine fever in wild boar. Eur J Wildl Res 69, 102.

Fujita, T., Mameno, K., Kubo, T., Masago, Y., Hijioka, Y. (2023) Unraveling the challenges of Japanese local climate change adaptation Centers: A Discussion and Analysis. Climate Risk Management, 100489.

Fukushima M, Rand P S. (2023) Individual variation in spawning migration timing in a salmonid fish-Exploring roles of environmental and social cues. Ecology and Evolution DOI:10.1002/ece3.10101.

Gonzalez, A., Vihervaara, P., Balvanera, P. et al. (2023) A global biodiversity observing system to unite monitoring and guide action. nature ecology & evolution, DOI: 10.1038/s41559-023-02171-0

Higashikawa W., Sueyoshi M., Mori T., Yonekura R., Nakamura K. (2023) The Satogawa Index: A landscape-based indicator for freshwater biodiversity in Japan. Ecological indicators 152:110350

Hinsley, A., Willis, J., Dent, A.R., Oyanedel, R., Kubo, T., Challender, D.W.S. (2023) Trading species to extinction: evidence of extinction linked to the wildlife trade. Cambridge Prisms: Extinction. DOI:10.1017/ext.2023.7 >

Ishiwaka N, Hashimoto K, Hiraiwa MK, Sánchez-Bayo F, Kadoya T, Hayasaka D. (2023) Can warming accelerate the decline of Odonata species in experimental paddies due to insecticide fipronil exposure? Environmental Pollution,DOI: 10.1016/j.envpol.2023.122831

Inoue T, Akaji Y, Baba S, Noguchi K. (2023) Temperature dependence of O² respiration in mangrove leaves and roots: implications for seedling dispersal phenology. New Phytologist, 237: 100-112.

Kass MJ, Fukaya K, Thuiller W, Mori SA. (2023) Biodiversity modeling advances improve predictions of nature’s contributions to people. TREE.　Trends in Ecology and Evolution, DOI:10.1016/j.tree.2023.10.011

Katayama M, Fukuda T, Kato N, Nagamine T, Nakaya Y, Nakajima N, et al. (2023) Cultured fibroblasts of the Okinawa rail present delayed innate immune response compared to that of chicken. PLoS ONE 18(8): e0290436.

Katayama M, Onuma M, Kato N, Nakajima N, Fukuda T. (2023) Organoids containing neural-like cells derived from chicken iPSCs respond to poly:IC through the RLR family. PLOS ONE, DOI: 10.1371/journal.pone.0285356

Kataoka, T., Sugimoto, R., Kaneda, A., Yamaguchi, H., Rihei, T., Yamashita, S. (2023). Seasonal variation in the community distribution of protists off Wakasa Bay, Southern Sea of Japan. Continental Shelf Research, 253, 104898.

Kato, S., Misumi, O., Maruyama, S., Nozaki, H., Tsujimoto-inui, Y., Takusagawa, M., Suzuki, S., Kuwata, K., Noda, S., Ito, N., Okabe, Y., Sakamoto, T., Yagisawa, F., Matsunaga, T. M., Matsubayashi, Y., Yamaguchi, H., Kawachi, M., Kuroiwa, H., Kuroiwa, T., Matsunaga, S. (2023) Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo. Communications Biology, 6, 89.

Kim, H., Shoji, Y., Mameno, K., Kubo, T., & Aikoh, T. (2023). Changes in visits to green spaces due to the COVID-19 pandemic: Focusing on the proportion of repeat visitors and the distances between green spaces and visitors’ places of residences. Urban Forestry & Urban Greening, 127828.

Kim, J.Y., Kubo, T, Nishihiro, J. (2023) Mobile phone data reveals spatiotemporal recreational patterns in conservation areas during the COVID pandemic. Sci Rep 13, 20282.

Kizuka T.,Mikami H.,Kameyama S.,Ono S.,Suzuki H. (2023) Hydrological environment affects the nutrient retention and runoff function of naturally re-wetted agricultural peatland in lowland river floodplain, Science of The Total Environment, 857,3, 20, 159483

Kohzu A, Matsuzaki SS, Komuro S, Komatsu K, Takamura N, Nakagawa M, Imai A, Fukushima T. (2023)Identifying the true drivers of abrupt changes in ecosystem state with a focus on time lags: Extreme precipitation can determine water quality in shallow lakes. Science of the Total Environment , DOI:10.1016/j.scitotenv.2023.163097

Koito, T., Ito, Y., Suzuki, A., Tame, A., Ikuta, T., Suzuki, M., Mitsunobu, S., Sugimura, M. Inoue, K. (2023) Difference in sulfur regulation mechanism between tube-dwelling and free-moving polychaetes sympatrically inhabiting deep-sea hydrothermal chimneys. Zoological Letters, 9, 18

Kubo, T., Yokoo, H. -F., Verissimo, D. (2023) Conservation fundraising:Evidence from social media and traditional mailfield experiments.Conservation Letters, e12931.

Mameno, K., Kubo, T. (2023) Mainstreaming eating agrobiodiversity: appealing with heron labels and boosting with loach labels. Food Quality and Preference, 104919.

Matsuba. M, Tsujimoto A., Tsuchiya M., Tanaka Y., Nomaki H. (2023) Effectiveness of hierarchical Bayesian models for citizen science data with missing values: A case study on the factors influencing beach litter in Shimane Prefecture, Japan. Marine Pollution Bulletin 191, 114948.

Matsuzaki SS, Kohzu A, Watanabe M, Kondo IN, Tatsuta A (2023) Use of legacy nitrogen as a resource: unfertilized lotus fields contribute to water quality improvement and biodiversity conservation. Nature-based solutions. DOI: 10.1016/j.nbsj.2023.100080

Mori, A.S., Suzuki, K.F,, Hori, M., Kadoya, T., Okano, K., Uraguchi , A., Muraoka, H., Sato, T., Shibata, H., Suzuki-Ohno, Y., Koba, K., Toda, M., Nakano, S., Kondoh, M., Kitajima, K., Nakamura, M. (2023) Sustainability challenges, opportunities, and solutions for long-term ecosystem observations. Philosophical Transactions of the Royal Society B: Biological Sciences 378: 20220192.

Nabeshima, K., Asakura, S., Iwata, R., Honjo, H., Haga, A., Goka, K., Onuma, M. (2023). Sequencing methods for HA and NA genes of avian influenza viruses from wild bird feces using Oxford Nanopore sequencing. Comparative immunology, microbiology and infectious diseases, 102, 102076. updated Jan. 24, 2024

Nabeshima, K., Takadate, Y., Soda, K., Hiono, T., Isoda, N., Sakoda, Y., Mine, J., Miyazawa, K., Onuma, M., Uchida, Y. (2023). Detection of H5N1 High Pathogenicity Avian Influenza Viruses in Four Raptors and Two Geese in Japan in the Fall of 2022. Viruses, 15(9), 1865. updated Jan. 24, 2024

Nagano, K., Hiraiwa, M.K., Ishiwaka, N., Seko, Y., Hashimoto, K., Uchida, T., Sánchez-Bayo, F., Hayasaka, D. (2023) Global warming intensifies the interference competition by a poleward-expanding invader on a native dragonfly species. Environmental Pollution, DOI: 10.1016/j.envpol.2023.122831

Nakadai, R. (2023) Macroecological processes drive spiritual ecosystem services obtained from giant trees. Nature Plants, DOI: 10.1038/s41477-022-01337-1

Nakaji T, Makita N, Katayama A, Oguma H. (2023) Belowground spectroscopy - Novel spectral approach for estimation of vertical and species-specific distributions of forest soil characteristics and heterotrophic respiration. Agricultural and Forest Meteorology, DOI: 10.1016/j.agrformet.2023.109563

Nava V, Aherne J, Alfonso B M, Antao-Geraldes M A, Attermeyer K, Bao R, Bartrons M, Berger A S, Biernaczyk M, Bissen R, Brookes J, Brown D, Canedo-Arguelles M, Canle M, Capelli C, Carballeira R, Cereijo L J, Chandra S, Chawchai S, Christensen T S, Christoffersen S K, Eyto E, Delgado J, Dornan N T, Doubek P J, Dusaucy J, Erina O, Ersoy Z, Feuchtmayr H, Frezzotti L M, Galafassi S, Gateuille D, Goncalves V, Grossart P H, Hamilton P D, Harris T, Kangur K, Kankılıç B G, Kessler R, Kiel C, Krynak M E, Leiva-Presa A, Lepori F, Matias G M, Matsuzaki S S, McElarney Y, Messyasz B, Mitchell M, Mlambo C M, Motitsoe N S, Nandini S, Owens C, Ozkundakci D, Pinnow S, Pociecha A, Raposeiro P, Room I E, Rotta F, Sartirana D, Salmaso N, Sarma SSS, Scordo F, Sibomana C , Siewert D, Stepanowska K, Tavşanoğlu N U, Tereshina M, Thompson J, Tolotti M, Valois A, Verburg P, Welsh B, Wesolek B, Weyhenmeyer A G, Wu N, Zawisza E, Zink L, Leoni B. (2023) Plastic debris in lakes and reservoirs. Nature, DOI: 10.1038/s41586-023-06168-4

Nishihara S, Shiga T, Nishihiro J. (2023) The discovery of a new locality for Aldrovanda vesiculosa (Droseraceae), a critically endangered free-floating plant in Japan, Journal of Asia-Pacific Biodiversity, DOI: 10.1016/j.japb.2023.03.013.

Nishizawa F, Kubo T, Akasaka M. (2023) Behavioral interventions to reduce unintentional non-native plants introduction: Personal factors matter,Biological Conservation, DOI: 10.1016/j.biocon.2023.110139

Nozaki, H., Mori, F., Tanaka, Y., Matsuzaki, R., Yamashita, S., Yamaguchi, H., Kawachi, M. (2023) Cryopreservation of two species of the multicellular volvocine green algal genus Astrephomene. BMC Microbiolgy, 23, 16. >

O’Brien, D.A., Deb, S., Gal, G., Thackeray, S.J., Dutta, P.S., Matsuzaki, S.S., May, L., Clements, C.F. (2023) Early warning signals have limited applicability to empirical lake data.Nature Communications, 14, 7942.

Okamoto R, Ide R, Oguma H. (2023) Automatically drawing vegetation classification maps using digital time-lapse cameras in alpine ecosystems, Remote Sensing in Ecology and Conservation, DOI: 10.1002/rse2.364

Ogawa, Y., Fukasawa, K., Yoshioka, A., Kumada, N., Takenaka, A., Ito, T. (2023). Quiz-style online training tool helps to learn birdsong identification and support citizen science. PeerJ, 11:e15387.

Rogers T, Munch S, Matsuzaki SS, Symons C. (2023) Intermittent instability is widespread in plankton communities. Ecology LettersRogers, DOI: 10.1111/ele.14168

Sawada A.(2023) A breeding record of Malayan Night Heron Gorsachius melanolophus on Hateruma Island. Ornithological Science, 22(2), 169-174.

Sawada A, Tatematsu K, Kawano T, Takagi M. (2023) First Direct Evidence of Inter-Island Dispersal of Ryukyu Scops Owl Otus elegans, Ornithological Science, 22(2), 191-194.

Seko, Y., Ikegami, M., Yokoi, T., Ikemoto, M., Goka, K., Sakamoto, Y. (2023) Acute toxicity data of common agricultural insecticides to Japanese wild bees. Data in Brief, 46, 108901. doi: 10.1016/j.dib.2023.108901

Senzaki, M., Ando, H., Kadoya, T. (2023) Noise pollution alters the diet composition of invertebrate consumers both in and beyond a noise-exposed grassland ecosystem. Ecology Letters, DOI:10.1111/ele.14323

Shin, N., Saitoh, T. M.,Takeuchi, Y., Miura, T., Aiba, M., Kurokawa, H.,Onoda, Y., Ichii, K., Nasahara, K. N., Suzuki, R.,Nakashizuka, T., Muraoka, H. (2023) Review:Monitoring of land cover changes and plantphenology by remote-sensing in East Asia.Ecological Research,38(1), 111-133.

Shinohara R, Matsuzaki SS, Watanabe M, Nakagawa M, Yoshida H, Kohzu A. (2023) Heat waves can cause hypoxia in shallow lakes. Geophysical Research Letters, 50, e2023GL102967.

Shoji Y, Tsuge T, Kubo T, Imamura K, Kuriyama K. (2023) "Examining Preferences for Forest Ecosystem Services using Partial Profile Choice Experiments", Journal of Forest Economics, 38, 3, 235-263.

Spillias S, Kelly R, Cottrell RS, O’Brien KR, Im RY, Lei C., Leung R.W.S, Matsuba M., Reis J. A.,Sato Y., Sempert K., McDonald-Madden E. (2023) The empirical evidence for the social-ecological impacts of seaweed farming. PLOS Sustainability and Transformation 2(2): e0000042.

Sueyoshi M., Miyagawa Y., Onoda Y., Hotta T., Kayaba Y., Nakamura K. (2023) Effects of repeated sediment bypassing on stream ecosystems in a Japanese mountainous river Restoration Ecology, DOI: 10.1111/rec.14049

Sueyoshi M., Tojo K., Ishiyama N., Nakamura F. (2023) Population stability and asymmetric migration of caddisfly populations, Stenopsyche marmorata (Stenopsychidae), in a forest-agriculture landscape. Aquatic Sciences 85, 98

Sugai Y, Natori N, Tsuchiya K, Nakagawa M, Honda M C, Shimode S, Toda T. (2023) Ingestion rate estimated from food concentration and predatory role of copepod nauplii in the microbial food web of temperate embayment waters, Journal of Plankton Research, fbad002, DOI: 10.1093/plankt/fbad002

Suzuki, A., Kamakura, M., Shiramata, T., Nakaoka, S., Sakamoto, Y. (2023) Comparison of RNA-Seq analysis data between tracheal mite-infested and uninfested Japanese honey bees (Apis cerana japonica). BMC Research Notes, 16, 122.

Suzuki, A., Nakajima, N., Sakamoto, Y. (2023) Draft genome sequences of Pantoea sp. strains QMID1-QMID4 isolated from the midgut of Japanese honey bee (Apis cerana japonica). Microbiology Resource Announcements, 12(9), e00010-23 .

Suzuki, T., Ikegami, M., Goka, K., Sakamoto, Y. (2023) Insecticide residues, associated with apple orchard treatments, in the mason bee, Osmia cornifrons, and their nests. Environmental Toxicology and Chemistry. doi.org/10.1002/etc.5635

Takeuchi, Y., Borjigin, H., Niiyama, K., Sato, T., Fukaya, K., Okuda, T., Hayashi M., Omar H., Norizan, A. M. (2023) UAV-based height measurement and height-diameter model integrating taxonomic effects: exploring vertical structure of aboveground biomass and species diversity in a Malaysian tropical forest. Environmental Research: Ecology. DOI 10.1088/2752-664X/acf9a9

Takeuchi Y., Diway B. (2023) Linkin genetic factors to toropical forest conservation manegement: A case study of Shorea Laxa. THE MALAYSIAN FORESTER, VOLUME 86, NO. 1,63 - 72.

Tanabe, Y., Yamaguchi, H., Yoshida, M. Kai., A. Okazaki, Y. (2023) Characterization of a bloom-associated alphaproteobacterial lineage, ‘Candidatus Phycosocius’: insights into freshwater algal-bacterial interactions. ISME Communications. 3, 20.

Taniguchi, T., Isobe, K., Imada, S., Eltayeb, M.M., Akaji, Y., Nakayama, M., Allen, M.F., Aronson, E.L. (2023) Root endophytic bacterial and fungal communities in a natural hot desert are differentially regulated in dry and wet seasons by stochastic processes and functional traits. Science of the Total Environment. DOI: 10.1016/j.scitotenv.2023.165524

Thomas-Walters L, Morkel B, KUBO T, Sas Rolfes M, Smith J R, Verissimo D. (2023) Understanding the market drivers behind the reduced demand for ivory products in Japan. Conservation & Society, DOI: 10.4103/cs.cs_155_21 LINK：The Conversation

Toyama, H., Tagane, S.,Aiba, S., Ugawa, S., Suzuki, E., Yamazaki, K., Fuse,K., Takashima, A., Kadoya, T., Takeuchi, Y.(2023) High plant diversity and characteristicplant community structure in broad-leavedevergreen forests on Amami-Oshima andTokunoshima Islands, Japan's newest naturalWorld Heritage Site.Ecological Research,1-17.

Tuji A, Nakagawa M. (2023) The filamentous colony-forming diatom Aulacoseira pusilla with a high mantle height/valve diameter ratio, Plankton and Benthos Research, 18, 4, 225-227

Yamamoto, K., Matsuzaki, R., Mahakham, W., Heman, W., Sekimoto, H., Kawachi, M. Minakuchi, Y., Toyoda, A., Nozaki, H. (2023) Expanded male sex-determining region conserved during the evolution of homothallism in the green alga Volvox. iScience, DOI:10.1016/j.isci.2023.106893

Yoshida K, Hata K, Kawakami K, Hiradate S , Osawa T, Kachi N. (2023) Predicting ecosystem changes by a new model of ecosystem evolution , Scientific Reports, DOI: 10.1038/s41598-023-42529-9

Yoshida, M.A., Mabuchi, K. (2023) Using a drifting GPS-Argos satellite buoy as a method for detecting acoustic-tagged fish offshore in an ancient lake. Animal Biotelemetry, 11, 30.

Yoshikawa, T., Koide, D., Yokomizo, H. Kim, J., Kadoya, T. (2023) Assessing ecosystem vulnerability under severe uncertainty of global climate change. Scientifc Reports, 13, 5932.

Yoshioka A, Mitamura T, Matsuki N, Shimizu A, Ouchi H, Oguma H, Jo J, Fukasawa K, Kumada N, Jingu S, Tabuchi K. (2023) Camera-trapping estimates of the relative population density of Sympetrum dragonflies: application to multihabitat users in agricultural landscapes. PeerJ 11:e14881

Yoshida M.A.,Nishida K.,Mabuchi K. (2023) The first record of spawning-season homing of gin-buna crucian carp Carassius sp. to a lakeside biotope connected to Lake Biwa confirmed via acoustic telemetry and egg surveys. Ichthyological Research, 70(3), 386-397

• 2022

Abe H., Kitano Y.F., Fujita T., Yamano H. (2022) Distribution, use, management, regulation, and future concerns of reef-building corals based on administrative documents in Japan. Marine Policy, 141, 105090.

Abe H., Kumagai N.H., Yamano H. (2022) Priority coral conservation areas under global warming in the Amami Islands, Southern Japan. Coral Reefs, 41, 1637-1650.

Abe H., Mitsui S., Yamano H. (2022) Conservation of the coral community and local stakeholders’ perceptions of climate change impacts: Examples and gap analysis in three Japanese national parks. Ocean and Coastal Management, 218, 106042.

Abe H., Sanbu M., Kanai M., Yamano H. (2022) Gaps in knowledge about distribution, utilization, and management of Sargassaceae (Fucales, Phaeophyta) in Okinawa Island, southern Japan. Regional Studies in Marine Science, 53, 102431.

Akaji Y., Inoue T., Taniguchi T., Baba S. (2022) Arbuscular mycorrhizal fungal communities of a mangrove forest along a salinity gradient on Iriomote Island. Plant and Soil, 472:145-159

Akasaka M., Kubo T., Soga M. (2022) How well does online information-seeking behavior indicate public conservation orientation? Taxonomy and personal characteristics matter. Journal for Nature Conservation, 66, DOI: 10.1007/s10584-022-03322-1
　
Amagai, Y., Oguma, H., Ishihama, F.(2022) Predicted scarcity of suitable habitat for alpine plant communities in northern Japan under climate change. Applied Vegetation Science, 25, e12694. DOI: 10.1111/avsc.126

Ando, H., Ikeno, S., Narita, A., Komura, T., Takada, A., Isagi, Y., Oguma, H., Inoue, T., Takenaka, A. (2022). Temporal and interspecific dietary variation in wintering ducks in agricultural landscapes. Molecular Ecology, 00, 1-13.

Chang C.W., Miki T., Ye H., Souissi S., Adrian R., Anneville O., Agasild H., Ban S., Shlevin Y.B., Chiang Y.R., Feuchtmayr H., Gal G., Ichise S., Kagami M., Kumagai M., Liu X., Matsuzaki S.I., Manca M., Noges P., Piscia R., Rogora M., Shiah F.K., Thackeray S., Widdicombe C., Wu J.T., Zohary T., Hsieh C.H. (2022) Causal networks of phytoplankton diversity and biomass are modulated by environmental context. Nature Communications. 13, 1140.

Cox, N., Young, B.E., Bowles, P. et al. (2022) A global reptile assessment highlights shared conservation needs of tetrapods. Nature 605, 285-290.

Diway B., Yasui Y., Innan H., Takeuchi Y. (2022) New locality and bud growth of the world biggest flower, Rafflesia tuan-mudae, in Naha Jaley, Sarawak, Malaysia. Tropics, 30, 4, 71-82.

Inoue T, Akaji Y, Khozu A, Hinokidani K, Adachi H, Kezuka M, Baba S. (2022) Relationship between plant growth and soil chemical properties in a mangrove afforestation stand, Kiribati. Plant and Soil, 479: 559-571.

Inoue T., Akaji Y., Noguchi K. (2022) Distinct responses of growth and respiration to growth temperatures in two mangrove species. Annals of Botany, 129: 15-28. LINK：Botany One

Inoue T., Yamada Y., Noguchi K. (2022) Growth temperature affects O₂ consumption rates and plasticity of respiratory flux to support shoot growth at various growth temperature. Plant, Cell & Environment, 45:133-146.

Garcia Molinos, J., Nobuo, I., Sueyoshi, M., Nakamura, F. (2022) Timescale mediates the effects of environmental controls on water temperature in mid- to low-order streams. Scientific Reports, 12. DOI: 10.1038/s41598-022-16318-9

Kadoya, T., Takeuchi, Y., Shinoda, Y., Nansai, K. (2022) Shifting agriculture is the dominant driver of forest disturbance in threatened forest species’ ranges. communications earth & environment, 3, 108.

Katayama, M., Fukuda, T., Kaneko, T., Nakagawa, Y., Tajima, A., Naito, M., Ohmaki, H., Endo, D., Asano, M., Nagamine, T., Nakaya, Y., Saito, K., Watanabe, Y., Tani, T., Inoue, M M., Nakajima, N., Onuma, M. (2022) Induced pluripotent stem cells of endangered avian species. Communications Biology, 5, 1049.

Kasada, M., Nakashima,Y., Fukasawa, K., Yajima, G., Yokomizo, H., Miyashita, T. (2022) State-space model combininglocal camera data and regional administration datareveals population dynamics of wild boar. Population Ecology, DOI:10.1002/1438-390X.12138KASADAET AL.13

Kitano M., Smallwood K., Fukaya K. (2022) Bird carcass detection from integrated trials at multiple wind farms. Journal of Wildlife Management. DOI: 10.1002/jwmg.22326

Mameno K., Kubo T (2022) Socio-economic drivers of irrigated paddy land abandonment and agro-ecosystem degradation: Evidence from Japanese agricultural census data. PLOS ONE 17(4): e0266997.

Mameno K., Kubo T., Oguma H., Amagai Y., Shoji Y. (2022) Decline in the alpine landscape aesthetic value in a national park under climate change. Climatic Change, 170, 35.
　
Mameno K., Kubo T., Suzuki T., Tsuge T., Shoji Y. (2022) Sanitation is the greatest concern in outdoor cat management but ecological message frames promote biodiversity conservation in Japan. Environmental Conservation page 1 of 8, DOI:10.1017/S0376892922000108

Mameno K, Kubo T, Ujiie K, Shoji Y. (2022) Flagship species and certification types affect consumer preferences for wildlife-friendly rice labels. Ecological Economics, 204, 107691.

Matsuzaki SS, Kohzu A, Tsuchiya K, Shinohara R, Nakagawa M, Fukumori K, Yamaguchi H, Kondo NI, Kadoya T. (2022) Water-level drawdowns can improve surface water quality and alleviate bottom hypoxia in shallow, eutrophic water bodies. Freshwater Biology, DOI:10.1111/fwb.14020

Matsuki, M., Shimizu, N., Tobiishi, K., Tanaka, Y., Yamaguchi, H., and Sano, T. (2022). An Analytical Method for Simultaneous Measurement of Various Cyanotoxins Using Stable Isotope-Labeled Surrogates and a Microbial Flora Analysis to Assign Each Cyanotoxin to its Source. Journal of Water and Environment Technology, 20, 261-272. updated Jan. 26, 2023

Nagayama, S., Sueyoshi, M., Fujii, R., Harada, M. (2022) Basin-scale spatiotemporal distribution of ayu Plecoglossus altivelis and its relationship with water temperature from summer growth to autumn spawning periods. Landscape and Ecological Engineering. DOI: 10.1007/s11355-022-00509-7

Nakadai R. (2022) Development of novel temporal beta-diversity indices for assessing community compositional shifts accounting for changes in the properties of individuals. Ecological Indicators, 144, 109427.

Nuraliev, S.M., Toyama, H., Hu, C., Luo, S., Lyskov, F.D., Kuznetsov, N.A., Kuznetsova, P.S., Quang, H.B., Binh, D.T. Hoan, T.D. (2022) Three new national records from Kon Chu Rang Nature Reserve, Vietnam: Euphorbia bokorensis, Glochidion geoffrayi and Lysimachia nutantiflora. Phytotaxa, 574 (1), 073-082.

Nyman, T., Wutke, S., Koivisto, E., Klemola, T., Shaw, M. R., Andersson, T., Haraldseide H., Hagen, S. B., Nakadai R., Ruohomaki, K. (2022) A curated DNA barcode reference library for parasitoids of northern European cyclically outbreaking geometrid moths. Ecology and Evolution, 12(11), e9525.

O'Brien DA, Gal G, Thackeray SJ, Matsuzaki SS, Clements CF (2022) Planktonic functional diversity changes in synchrony with lake ecosystem state. Global Change Biology. DOI: 10.1111/gcb.16485

Saito R., Kumada, R., Inami, K., Kanda, K., Kabeya, M., Tamaoki, M., Nemoto, Y. (2022) Monitoring of radioactive cesium in wild boars captured inside the difficult-to-return zone in Fukushima Prefecture over a five-year period. Scientific Reports, 12, 5667.

Saito R, Kondo N.I., Nemoto Y., Kumada R., Nakajima N., Tamaoki M. (2022) Genetic Population Structure of Wild Boars (Sus scrofa) in Fukushima Prefecture. Animals 2022, 12, 491.
　
Saji, S., Saji, H., Sage-Ono, K., Nakajima, N., Aono, M. (2022) Phytocyanin-encoding genes confer enhanced ozone tolerance in Arabidopsis thaliana. Scientific Reports, DOI: 10.1038/s41598-022-25706-0

Sakamoto, H., Goka K. (2022) Efficiency of ant-control agents in colony-level oral toxicity tests using Tetramorium tsushimae (Hymenoptera: Formicidae) for post-establishment control of the red imported fire ant, Solenopsis invicta (Hymenoptera: Formicidae). Applied Entomology and Zoology, DOI: 10.1007/s13355-022-00800-x

Sakamoto, Y., Koh, S.K., Yago, M. (2022) Genetic variation and Wolbachia infection status of the lycaenid butterfly Zizina emelina (Lepidoptera, Lycaenidae) from Korean populations. Journal of Asia-Pacific Entomology, 25, 101975. DOI: 10.1016/j.aspen.2022.101975

Sakamoto Y., Yoshiyama M., Maeda T., Goka K. (2022) Effects of neonicotinoids on honey bee autogrooming behavior against the tracheal mite Acarapis woodi. Ecotoxicology, DOI:10.1007/s10646-021-02503-5.
　
Sawada A., Iwasaki T, Akatani K., Takagi M. (2022) Mate choice for body size leads to size assortative mating in the Ryukyu Scops Owl Otus elegans. Ecology and Evolution, DOI:10.1002/ece3.9578

Sharma, S., Filazzola, A., Nguyen, T. et al. (2022) Long-term ice phenology records spanning up to 578 years for 78 lakes around the Northern Hemisphere. Scientific Data, 9, 318.

Shimozuru, M., Jimbo, M., Adachi, K., Kawamura, K., Shirane, Y., Umemura, Y., Ishinazaka, T., Nakanishi, M., Kiyonari, M., Yamanaka, M., Amagai, Y., Ijuin, A., Sakiyama, T., Kasai, S., Nose, T., Shirayanagi, M., Tsuruga, H., Mano, T., Tsubota, T. Fukasawa, K., Uno, H. (2022). Estimation of breeding population size using DNA-based pedigree reconstruction in brown bears. Ecology and Evolution, 12, e9246.

Shinohara, N., Nakadai,R., Suzuki, Y., Terui, A. (2022) Spatiotemporaldimensions of community assembly.PopulationEcology, DOI:10.1002/1438-390X.

Shinohara, R., Matsuzaki, S. S., Nakagawa, M., Tsuchiya, K., Kohzu, A. (2022) Does increased springtime solar radiation also increase primary production?. Journal of Plankton Research, 44(4), 496-506.

Sugimoto N., Fukasawa K., Asahara A., Kasada M., Matsuba M., Miyashita T. (2022) Positive and negative effects of land abandonment on butterfly communities revealed by a hierarchical sampling design across climatic regions. Proceedings of the Royal Society B, 289, 1971

Suzuki, A., Shirakata, C., Anzai, H., Sumiyama, D., Suzuki, M. (2022) Vitamin B₁₂ biosynthesis of Cetobacterium ceti isolated from the intestinal content of captive common bottlenose dolphins (Tursiops truncatus). Microbiology, 168(9), 001244. DOI: 10.1099/mic.0.001244. updated Feb. 9, 2023

Suzuki K., Matsuzaki S. S., Masuya H. (2022) Decomposing predictability to identify dominant causal drivers in complex ecosystems. Proceedings of the National Academy of Sciences, DOI: 10.1073/pnas.2204405119

Suzuki S., Matsuzaki R., Yamaguchi H., Kawachi M. (2022) What happened before losses of photosynthesis in cryptophyte algae?. Molecular Biology and Evolution, DOI: 10.1093/molbev/msac001.

Suzuki, S., Ota, S., Yamagishi, T., Tuji, A., Yamaguchi, H., Kawachi, M. (2022). Rapid transcriptomic and physiological changes in the freshwater pennate diatom Mayamaea pseudoterrestris in response to copper exposure. DNA Reserch, 29, 1-12. updated Jan. 26, 2023

Suzuki, S., Yamaguchi, H., Kawachi, M. (2022). Potential genetic diversity of Synechococcus-related strains maintained in the Microbial Culture Collection of the National Institute for Environmental Studies, Japan. Microbial Resources and Systematics, 38(2), 63-74. updated Jan. 26, 2023

Takahata K., Suetsugu H., Fukaya K., Shirota S. (2022) Bayesian state-space SCM for deforestation baseline estimation for forest carbon credit. NeurIPS 2022 Workshop on Tackling Climate Change with Machine Learning.

Takeuchi Y., Ohtsuki H., Innan H. (2022) Non‐zero‐sum neutrality test for the tropical rain forest community using long‐term between‐census data. Ecology and Evolution, DOI : 10.1002/ece3.8462.

Taniguchi T., Akaji Y., Yamato M., Kusakabe R., Goomaral A., Undarmaa J., Yamanaka N. (2022) Dominance of arbuscular mycorrhizal fungi is key for Mongolian steppe management under livestock grazing, as indicated by ecosystem multifunctionality. Ecological Indicators, 136:108686

Tolod, J.R., Negishi, J.N., Ishiyama, N., Alam, M.K., Rahman, M.A.T.M., Pongsivapai, P., Gao, Y., Sueyoshi, M., Nakamura, F. (2022) Catchment geology preconditions spatio-temporal heterogeneity of ecosystem functioning in forested headwater streams. Hydrobiologia. DOI: 10.1007/s10750-022-04992-9

Toyama H., Tagane S., Dang VS., Chhang P., Nagamasu H., Yahara T. (2022) Taxonomic Re-evaluation of Garcinia bonii Pit. (Clusiaceae). Acta Phytotaxonomica et Geobotanica, 73(1):73-76

Toyama H., Totsu K., Tagane S., Aiba S., Ugawa S., Suzuki E., Yamazaki K., Fuse K., Takashima A., Toyama N., Kadoya T., Takeuchi Y. (2022) A dataset for vascular plant diversity monitoring for the natural World Heritage site on Amami-Oshima Island, Tokunoshima Island, and the northern Okinawa Island. Ecological Research, 37(5), 676-682.

Tsujimoto D*., Ando H* (*Co-first author)., Suzuki H., Horikoshi K, Nakajima N., Suyama Y., Matsuo A., Fujii C., Isagi Y. (2022) Has long-distance flight ability been maintained by pigeons in highly insular habitats?. Journal of Biogepgraphy, DOI: 10.1111/jbi.14529

• 2021

Abe H. (2021) Climate warming promotes Pacific oyster (Magallana gigas) production in a subarctic lagoon and bay, Japan: Projection of future trends using a three dimensional physical-ecosystem coupled model. Regional Studies in Marine Science, 47, 101968.

Abe H., Kumagai N.H., Yamano H., Kuramoto Y. (2021) Coupling high-resolution coral bleaching modeling with management practices to identify areas for conservation in a warming climate: Keramashoto National Park (Okinawa Prefecture, Japan). Science of the Total Environment, 790, 148094

Abe H., Suzuki H., Kitano Y.F., Kumagai N.H., Mitsui S., Yamano H. (2021) Climate-induced species range shift and local adaptation strategies in a temperate marine protected area, Ashizuri-Uwakai National Park, Shikoku Island, western Japan. Ocean & Coastal Management, 210, 105744

Anderson D., Beresford N.A., Ishiniwa H., Onuma M., Nanba K., Hinton T.G. (2021) Radiocesium concentration ratios and radiation dose to wild rodents in Fukushima Prefecture. Journal of Environmental Radioactivity, 226, 106457

Ando H., Mori Y., Nishihiro M., Mizukoshi K., Akaike M., Kitamura W., J Sato N. (2021) Highly mobile seed predators contribute to interisland seed dispersal within an oceanic archipelago. Oikos

Doubek J.P., Anneville O., Dur G., Lewandowska A.M., Patil V.P., Rusak J.A., Salmaso N., Seltmann C.T., Straile D., Urrutia-Cordero P., Venail P., Adrian R., Alfonso M.B., DeGasperi C.L., de Eyto E., Feuchtmayr H., Gaiser E.E., Girdner S.F., Graham J.L., Grossart H.P., Hejzlar J., Jacquet S., Kirillin G., Llames M.E., Matsuzaki S.S., Nodine E.R., Piccolo C.M., Pierson D.C., Rimmer A., Rudstam L.G., Sadro S., Swain H.M., Thackeray S.J., Thiery W., Verburg P., Zohary T., Stockwell J.D. (2021) The extent and variability of storm-induced temperature changes in lakes measured with long-term and high-frequency data. Limnology and Oceanography, 66, 1979-1992

Edouard L., Kume M., Ahn H., Henmi Y., Terashima Y., Ye F., Kameyama S., Kai Y., Kadowaki K., Kobayashi S., Yamashita Y., Kasai A.(2021) Effects of forest cover on richness of threatened fish species in Japan. Conservation Biology, doi: 10.1111/cobi.13849.

Feng Z., Agathokleous E., Yue X., Oksanen E., Paoletti E., Sase H., Gandin A., Koike T., Calatayud V., Yuan X., Liu X., De Marco A., Jolivet Y., Kontunen-Soppela S., Hoshika Y., Saji H., Li P., Li Z., Watanabe M., Kobayashi K. (2021) Emerging challenges of ozone impacts on asian plants: actions are needed to protect ecosystem health. Ecosystem Health and Sustainability, 7, 1911602

Fisher J., Yoh N., Kubo T., Rundle D. (2021) Could Nintendo’s Animal Crossing be a tool for conservation messaging? People and Nature （External link：Twitter）

Fujimoto K., Ono K., Watanabe S., Taniguchi S., Inoue T., Kanayama K., Ogawa T. (2021) Estimation of probable annual fine-root production and missing dead roots associated with the ingrowth core method: attempt with major mangrove species on Iriomote Island, southwestern Japan, locates in the subtropics. Mangrove Science, 12, 11-24

Fukaya K., Kondo N. I., Matsuzaki S. S., Kadoya T. (2021) Multispecies site occupancy modeling and study design for spatially replicated environmental DNA metabarcoding. Methods in Ecology and Evolution. doi:10.1111/2041-210X.13732

Fukushima M., Rand P.S. (2021) High rates of consecutive spawning and precise homing in Sakhalin taimen (Parahucho perryi). Environmental Biology of Fishes, 104, 41-52

Goka K., Yokoyama J., Tominaga A. (2021) Distribution and Genetic Diversity of the Amphibian Chytrid in Japan. Journal of Fungi, 7, 522

Hata, A., Nakashita, R., Fukasawa, K., Minami, M., Fukue, Y., Higuchi, N., Uno, H., Nakajima, Y., Saeki, M., Kozakai, C., Takada, M. B. (2021) Occurrence patterns of crop-foraging sika deer distribution in an agriculture-forest landscape revealed by nitrogen stable isotopes. Ecology and Evolution, 11, 15303-15311.

Haubrock P.J., Balzani P., Matsuzaki S.S., Tarkan A.S., Kourantidou M., Haase P. (2021) Spatio-temporal niche plasticity of a freshwater invader as a harbinger of impact variability. Science of the Total Environmen, 777, 145947

Higashide, D., Kuriyama, T., Takagi, S., Nakashima, Y., Fukasawa, K., Yajima, G., Kasada, M., Yokoyama, M. (2021) Effectiveness of signs of activity as relative abundance indices for wild boar. Wildlife Biology, doi: 10.2981/wlb.00869

Hirata M., Mitsuyuki C., Moritsuka E., Chhang P., Tagane S., Toyama H., Sokh H., Rueangruea S., Suddee S., Suyama Y., Yahara T., Teshima M.K., Tachida H., Kusumi J. (2021) Evaluating the genetic diversity in two tropical leguminous trees, Dalbergia cochinchinensis and D. nigrescens, in lowland forests in Cambodia and Thailand using MIG-seq. Genes & Genetic Systems, 96, 1-13

Hirose Y., Ohtsubo Y., Misawa N., Yonekawa C., Nagao N., Shimura Y., Fujisawa T., Kanesaki Y, Katoh H., Katayama M., Yamaguchi H, Yoshikawa H., Ikeuchi M, Eki T., Nakamura Y., Kawachi M. (2021) Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade, DNA Research, doi:10.1093/dsab024.

Inoue T., Noguchi K. (2021) Theoretical analysis of temperature‐dependent model of respiratory O₂ consumption using the kinetics of the cytochrome and alternative pathways. New Phytologist, 229, 1810-1821.

Isada T., Abe H., Kasai H., Nakaoka M. (2021) Dynamics of nutrients and colored dissolved organic matter absorption in a wetland-influenced subarctic coastal region of northeastern Japan: Contributions from mariculture and eelgrass meadows. Frontiers in Marine Science, 8, 1452

Iwaki M., Takamura N., Nakada S., Oguma H.(2021) Monitoring of lake environment using a fixed point and time-lapse camera - Case study of south basin of Lake Biwa. Journal of The Remote Sensing Society of Japan, 41(5):563-574

Iwasaki Y., Fukaya K., Fuchida S., Matsumoto S., Araoka D., Tokoro C., Yasutaka T. (2021) Projecting future changes in element concentrations of approximately 100 untreated discharges from legacy mines in Japan by a hierarchical log-linear model. Science of The Total Environment, 786, 147500

Jane S.F., Hansen G.J.A., Kraemer B.M., Leavitt P.R., Mincer J.L., North R.L., Pilla R.M., Stetler J.T., Williamson C.E., Woolway R.I., Arvola L., Chandra S., DeGasperi C.L., Diemer L., Dunalska J., Erina O., Flaim G., Grossart H.P., Hambright K.D., Hein C., Hejzlar J., Janus L.L., Jenny J.P., Jones J.R., Knoll L.B., Leoni B., Mackay E., Matsuzaki S.S., McBride C., Muller-Navarra D.C., Paterson A.M., Pierson D., Rogora M., Rusak J.A., Sadro S., Saulnier-Talbot E., Schmid M., Sommaruga R., Thiery W., Verburg P., Weathers K.C., Weyhenmeyer G.A., Yokota K., Rose K.C. (2021) Widespread deoxygenation of temperate lakes. Nature, 594, 66-70

Kajita Y., Toyama H., Akai K., Naiki A. (2021) Morphology, phenology, and chromosomal observations in Najas minor and Najas chinensis from Iriomote Island, Okinwa, Japan. Acta Phytotaxonomica et Geobotanica, 72, 167-177

Kasai A., Yamazaki A., Ahn H., Yamanaka H., Kameyama S., Masuda R., Azuma H., Kimura S., Karaki T., Kurokawa Y., Yamashita Y. (2021) Distribution of Japanese eel Anguilla japonica revealed by environmental DNA. Frontiers in Ecology and Evolution, 9, 621461

Katayama M., Onuma M., Fukuda T. (2021) KAv-1 is Better Suited to Chick Fibroblast Culture than DMEM or 199 Media. The Journal of Poultry Science

Kawachi M., Nakayama T., Kayama M., Nomura M., Miyashita H., Bojo O., Rhodes L., Sym S., Pienaar R.N., Probert I., Inouye I., Kamikawa R. (2021) Rappemonads are haptophyte phytoplankton. Current Biology, 31, 2395-2403

Kim H., Shoji Y., Tsuge T., Kubo T., Nakamura F. (2021) Relational values help explain green infrastructure preferences: The case of managing crane habitat in Hokkaido, Japan. People and Nature, 3, 861-871

Kim J.Y., Koide D., Ishihama F., Kadoya T., Nishihiro J. (2021) Current site planning of medium to large solar power systems accelerates the loss of the remaining semi-natural and agricultural habitats. Science of the Total Environment, 779, 146475

Koide D., Yoshikawa T., Ishihama F., Kadoya T. (2021) Complex range shifts among forest functional types under the contemporary warming. Global Change Biology, doi:10.1111/gcb.16001.

Kubo T., Verissimo D., Uryu S., Mieno T., MacMillan D. (2021) What determines the success and failure of environmental crowdfunding? Ambio, 50, 1659-1669

Kumano N., Tamura M., Inoue T., Yokoki H. (2021) Estimating the cost of coastal adaptation using mangrove forest against sea level rise. Coastal Engineering Journal, 63, 263-274

Maasri A., Jahnig S.C., Adamescu M.C., Adrian R., Baigun C., Baird D.J., et al. (2021) A global agenda for advancing freshwater biodiversity research. Ecology Letters, doi: 10.1111/ele.13931.

Makita Y., Suzuki S., Fushimi K., Shimada S., Suehisa A., Hirata M., Kuriyama T., Kurihara Y., Hamasaki H., Okubo-Kurihara E., Yoshitake K., Watanabe T., Sakuta M., Gojobori T., Sakami T., Narikawa R., Yamaguchi H., Kawachi M., Matsui M. (2021) A novel bifunctional photoreceptor, Dualchrome1, isolated from an oceanic green picoplankton. Nature Communications, 12, 3593

Mameno K., Kubo T., Shoji Y. (2021) Price premiums for wildlife-friendly rice: Insights from Japanese retail data. Conservation Science and Practice, 3, e417

Matsuhashi S., Asai M., Fukasawa K. (2021) Estimations and projections of Avena fatua dynamics under multiple management scenarios in crop fields using simplified longitudinal monitoring. PLoS ONE, 16, e0245217

Miyashita T., Matsui F., Deto H., Imai T., Kondo N.I. (2021) Fine-scale population fragmentation of a grassland butterfly Plebejus argyrognomon inhabiting agricultural field margin and riverbank in rural landscapes. Entomological Science, 24: 382-390.

Nagahama A., Tagane S., Zhang M., Ngoc N.V., Binh H.T., Cuong T.Q., Nagamasu H., Toyama H., Tsuchiya K., Yahara T. (2021) Claoxylon langbiangense (Euphorbiaceae), a New Species from Southern Vietnam. Acta Phytotaxonomica et Geobotanica 72 (3): 275-280.

Nakadai, R. (2021) Individual-based multiple-unit dissimilarity: novel indices and null model for assessing temporal variability in community composition. Oecologia, 197(2), 353-364.

Nakadai, R., Nyman, T., Hashimoto, K., Iwasaki, T., & Valtonen, A. (2021) Fundamental resource specialization of herbivorous butterflies decreases towards lower latitudes. Journal of Biogeography, 48(10), 2524-2537.

Ngoc N.V., Binh H.T., Nagahama A., Tagane S., Toyama H., Matsuo A., Suyama Y., Yahara T. (2021) Morphological and molecular evidence reveals three new species of Lithocarpus (Fagaceae) from Bidoup-Nui Ba National Park, Vietnam. PhytoKeys 186: 73-92.

Nishizawa F., Kubo T., Koyama A., Akasaka M. (2021) Disconnection between conservation awareness and outcome: Identifying a bottleneck on non-native species introduction via footwear. Journal of Environmental Mamagement, 298, 113439

Okada T., Mito Y., Akiyama Y.B., Tokunaga K., Sugino H., Kubo T., Endo T., Otani S., Yamochi S., Kozuki Y., Kusakabe T. (2021) Green port structures and their ecosystem services in highly urbanized Japanese bays. Coastal Engineering Journal, 1-13

Sakamoto H., Goka K. (2021) Acute toxicity of typical ant control agents to the red imported fire ant, Solenopsis invicta (Hymenoptera: Formicidae). Applied Entomology and Zoology, 56, 217-224

Sakamoto K., Tomonari M., Ariya U., Nakagiri E., Matsumoto T.K., Akaji Y., Otoda T., Hirobe M., Nachin B. (2021) Effects of large-scale forest fire followed by illegal logging on the regeneration of boreal forests in Mongolia. Landscape and Ecological Engineering, 17, 267-279

Sakuma A., Abe H., Yamano H. (2021) Short-term sediment plume event in the coral reef area of a small island captured by the Planet Dove satellite constellation. Remote Sensing Letters, 12, 1038-1048

Saowakoon S., Saowakoon K., Jutagate A., Hiroki M., Fukushima M., Jutagate T. (2021) Growth and feeding behavior of fishes in organic rice-fish systems with various species combinations. Aquaculture Reports, 20, 100663

Sharma S, Richardson DC., Woolway RI., Imrit MA., Bouffard D., Blagrave K., Daly J., Filazzola A., Granin N., Korhonen J., Magnuson J., Marszelewski W., Matsuzaki S.S., Perry W., Robertson D., Rudstam L., Weyhenmeyer GA., Yao H. (2021) Loss of ice cover, shifting phenology, and more extreme events in Northern Hemisphere lakes. Journal of Geophysical Research: Biogeosciences, 126, e2021JG006348.

Seko Y., Hashimoto K., Koba K., Hayasaka D., Sawahata T. (2021) Intraspecific differences in the invasion success of the Argentine ant Linepithema humile Mayr are associated with diet breadth. Scientific Reports, 11, 2874

Shoji Y., Kim H., Kubo T., Tsuge T., Aikoh T., Kuriyama K. (2021) Understanding preferences for pricing policies in Japan's national park using the best-worst scaling method. Journal for Nature Conservation, 60, 125954

Tagane S., Nagamasu H., Chhang P., Son H.T., Toyama H., Yahara T. (2021) Flora of Bokor National Park VIII : a new species of Cleyera (Pentaphylacaceae), C. bokorensis. Acta Phytotaxonomica et Geobotanica, 72, 145-151

Takahashi S., Namioka Y., Rafid Azis H., Sano T., Aono M., Koshiyama M., Fujisawa H., Isoda H. (2021) Prohydrojasmon Promotes the Accumulation of Phenolic Compounds in Red-Leaf Lettuce. Plants, 10(9), 1920

Takenaka A., Oguma H., Amagai Y., Ishihama F. (2021) SecSel, a new software tool for conservation prioritization that is applicable to ordinal-scale data for multiple biodiversity features. PLoS ONE, 16, e0247737

Takeuchi Y., Diway B. (2021) Long pollen dispersal prevents biparental inbreeding depression in seeds in a natural population of the tropical tree Shorea laxa. Forest Ecology and Management, 489, 119063

Takeuchi Y., Muraoka H., Yamakita T., Kano Y., Nagai S., Bunthang T., Costello M., Darnaedi D., Diway B., Ganyai T., Grudpan C., Hughes A., Ishii R., Lim P.T., Ma K., Muslim A., Nakano S., Nakaoka M., Nakashizuka T., Onuma M., Park C.H., Pungga S.R., Saito Y., Shakya M., Sulaiman M., Sumi M., Thach P., Trisurat Y., Xu X., Yamano H., Yao T.L., Kim E.S., Vergara S., Yahara T. (2021) The Asia-Pacific Biodiversity Observation Network: 10-year achievements and new strategies to 2030. Ecological Research, 36, 232-257

Takinami H., Ishiyama N., Hino T., Kubo T., Tomita K., Tsujino M., Nakamura F. (2021) Young citizen sensors for managing large carnivores: Lessons from 40 years of monitoring a brown bear population. Conservation Science and Practice, e484

Terui A., Kim S., Christine LD., Kadoya T., Miyazaki Y. (2021) Emergent dual scaling of riverine biodiversity. PNAS, 118, 47, e2105574118

Tsuchiya K., Kohzu A., Kuwahara V.S., Matsuzaki S.S., Denda M., Hirabayashi K. (2021) Different regulation of planktonic and epilithic biofilm bacterial production in the middle reaches of a temperate river. Aquatic Microbial Ecology, 87, 47-60

Tuji A., Yamaguchi H., Kataoka T., Sato M., Sano T., Niiyama Y. (2021) Annamia dubia sp. nov. with a description of a new family, Geminocystaceae fam. nov. (Cyanobacteria). Fottea, 21, 100-109

Tsuji H., Nakagawa M., Iijima K., Funaki H., Yoshimura K., Sakuma K., Hayashi S. (2021) Dynamics of ¹³⁷Cs in Water and Phyto- and Zooplankton in Dam Lake Affected by Fukushima Daiichi Nuclear Power Plant Accident. Global Environmental Research, 24, 115-127

Uryu S., Tanoue Y., Nomura S., Matsuura K., Makiyama K., Kawashima T., Yoneoka D., Eguchi A., Kawamura Y., Gilmour S., Sakamoto H., Shimizu K., Sheng Ng C.F., Hashizume M. (2021) Trends in emergency transportation due to heat illness under the new normal lifestyle in the COVID-19 era, in Japan and 47 prefectures. Science of The Total Environment, 768, 144723

Valtonen, A., Korkiatupa, E., Holm, S., Malinga, G. M., & Nakadai, R. (2021). Remotely sensed vegetation greening along a restoration gradient of a tropical forest, Kibale National Park, Uganda. Land Degradation & Development, 32(18), 5166-5177.

Yamasaki k.,Tabuchi K., Takahashi A., Osawa T., Yoshioka A,Ishigooka Y., Sudo S.,Takada B.M.(2021) Intraspecific variations in life history traits of two pecky rice bug species from Japan: Mapping emergence dates and number of annual generations. Ecology & Evolution, doi:10.1002/ece3.8329

Ye F., Kameyama S. (2021) Long-term nationwide spatiotemporal changes of freshwater temperature in Japan during 1982-2016. Journal of Environmental Management, 281, 111866

Yokohata T., Iwahana G., Sone T., Saito K., Ishizaki N. N., Kubo T., Oguma H., Uchida M. (2021) Projections of surface air temperature required to sustain permafrost and importance of adaptation to climate change in the Daisetsu Mountains, Japan. Scientific Reports, 11, 15518

Yoneoka D., Shi S., Nomura S., Tanoue Y., Kawashima T., Eguchi A., Matsuura K., Makiyama K., Uryu S., Ejima K., Sakamoto H., Taniguchi T., Kunishima H., Gilmour S., Nishiura H., Miyata H. (2021) Assessing the regional impact of Japan’s COVID-19 state of emergency declaration: a population-level observational study using social networking services. BMJ Open, 11, e042002

• 2020

Abe H., Suzuki H., Kumagai N.H., Yamano H. (2020) Distribution gradient of fucoid algae (Sargassaceae, Phaeophyta) along the coastline of Okinawa Island, southern Japan: relationship to environmental factors. Regional Studies in Marine Science, 40, 101526

Ahn H., Kume M., Terashima Y., Feng Y., Kameyama S., Miya M., Yamashita Y., Kasai A. (2020) Evaluation of biodiversity in estuaries using environmental DNA metabarcoding. bioRxiv, 1-31

Ahn H., Kume M., Terashima Y., Feng Y., Kameyama S., Miya M., Yamashita Y., Kasai A. (2020) Evaluation of fish biodiversity in estuaries using environmental DNA metabarcoding. PLoS ONE, 15, e0231127

Ando H., Mukai H., Komura T., Dewi T., Ando M., Isagi Y. (2020) Methodological trends and perspectives of animal dietary studies by noninvasive fecal DNA metabarcoding. Environmental DNA, 2, 391-406

Arita K., Suzuki H., Yamano H., Yabe T., Kumagai N.H. (2020) Quantitative records of habitat-forming seaweeds found in Japanese temperate and subtropical zones (fucoids and kelps). Ecological Research, 35, 967-974

Chang C.W., Ye H., Miki T., Deyle E.R., Souissi S., Anneville O., Adrian R., Chiang Y.R., Ichise S., Kumagai M., Matsuzaki S.S., Shiah F.K., Wu J.T., Hsieh C.H., Sugihara G. (2020) Long-term warming destabilizes aquatic ecosystems through weakening biodiversity-mediated causal networks. Global Change Biology, 26, 6413-6423

Chen R., Shimono A., Aono M., Nakajima N., Ohsawa R., Yoshioka Y. (2020) Genetic diversity and population structure of feral rapeseed (Brassica napus L.) in Japan. PLoS ONE, 15, e0227990

Dai B., Jiang Z., Wang C., Matsuzaki S.S., Zhou L. (2020) Abundance-based dissimilarity measurements reveal higher heterogeneity of fish communities in the lotic habitats of the Yangtze-Caizi transitional floodplain. Ecological Indicators, 112, 106122

Fukasawa K., Osada Y., Iijima H. (2020) Is harvest size a valid indirect measure of abundance for evaluating the population size of game animals using harvest-based estimation? Wildlife Biology

Fukaya K., Kusumoto B., Shiono T., Fujinuma J., Kubota Y. (2020) Integrating multiple sources of ecological data to unveil macroscale species abundance. Nature Communications, 11, 1695

Fukaya K., Murakami H., Yoon S., Minami K., Osada Y., Yamamoto S., Masuda R., Kasai A., Miyashita K., Minamoto T., Kondoh M. (2020) Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modeling. Molecular Ecology

Fukumori H., Itoh H., Nakajima N., Kano Y. (2020) The mitochondrial genome and phylogenetic position of a marine snail Nerita (Heminerita) japonica (Gastropoda: Neritimorpha: Neritidae). Mitochondrial DNA Part B Resources, 5, 3597-3599

Gilbert B., MacDougall A., Kadoya T., Akasaka M., Bennett J., Lind E., Flores-Moreno H., Firn J., Hautier Y., Borer E., Seabloom E., Adler P., Cleland E., Grace J., Harpole W., Esch E., Moore J., Knops J., McCulley R., Mortensen B., Bakker J., Fay P. (2020) Climate and Local Environment Structure Asynchrony and the Stability of Primary Production in Grasslands. Global Ecology and Biogeography, 29, 1177-1188

Hashimoto K., Kasai A., Hayasaka D., Goka K., Hayashi T.I. (2020) Long-term monitoring reveals among-year consistency in the ecological impacts of insecticides on animal communities in paddies. Ecological Indicators, 113, 106227

Hashimoto Y., Sakamoto H., Asai H., Yasoshima M., Lin H.M., Goka K. (2020) The effect of fumigation with microencapsulated allyl isothiocyanate in a gas-barrier bag against Solenopsis invicta (Hymenoptera: Formicidae). Applied Entomology and Zoology, 55, 345-350

Hiki K., Ariyama H., Nakajima N. (2020) The complete mitochondrial genomes of two amphipod species of the genus Grandidierella (Crustacea: Amphipoda). Mitochondrial DNA Part B, 5, 1535-1536

Hiroki M., Tomioka N., Murata T., Imai A., Jutagate T., Preecha C., Avakul P., Phomikong P., Fukushima M. (2020) Primary production estimated for large lakes and reservoirs in the Mekong River Basin. Science of the Total Environment, 747, 141133

Honjo K., Kubo T. (2020) Social Dilemmas in Nature-Based Tourism Depend on Social Value Orientations. Scientific Reports, 10, 3730

Ikegami M., Tsujii K., Ishizuka A., Nakagawa N., Kishi S., Sakamoto Y., Sakamoto H., Goka K. (2020) Environments, spatial structures, and species competitions: determining the impact of yellow-legged hornets, Vespa velutina, on native wasps and bees on Tsushima Island, Japan. Biological Invasions, 22, 3131-3143

Imamura K., Takano T. K., Kumagai N. H., Yoshida Y., Yamano H., Fujii M., Nakashizuka T., Managi S. (2020) Valuation of coral reefs in Japan: Willingness to pay for conservation and the effect of information. Ecosystem Services, 46, 101166

Inoue T., Noguchi K. (2021) Theoretical analysis of temperature‐dependent model of respiratory O₂ consumption using the kinetics of the cytochrome and alternative pathways. New Phytologist, 229, 1810-1821

Inoue T., Shimono A., Akaji Y., Baba S., Takenaka A., Chan H.T. (2020) Mangrove-diazotroph relationships at the root, tree and forest scales: diazotrophic communities create high soil nitrogenase activities in Rhizophora stylosa rhizospheres. Annals of Botany, 125(1), 131-144. DOI: 10.1093/aob/mcz164 LINK：Botany One

Ishi C., Ikenaka Y., Nakayama M.M.S., Kuritani T., Nakagawa M., Saito K., Watanabe Y., Ogasawara K., Onuma M., Haga A., Ishizuka M. (2020) Current situation regarding lead exposure in birds in Japan (2015-2018); lead exposure is still occurring. Journal of Veterinary Medical Science, 82, 1118-1123

Ishii Y., Matsuzaki S.S., Hayashi S. (2020) Data on ¹³⁷Cs concentration factor of freshwater fish and aquatic organisms in lake and river ecosystems. Data in Brief, 28, 105043

Ishii Y., Matsuzaki S.S., Hayashi S. (2020) Different factors determine ¹³⁷Cs concentration factors of freshwater fish and aquatic organisms in lake and river ecosystems. Journal of Environmental Radioactivity, 213, 106102

Ito H., Nakajima N., Onuma M., Murayama M. (2020) Genetic Diversity and Genetic Structure of the Wild Tsushima Leopard Cat from Genome-Wide Analysis. Animals, 10, 1375

Ito H.C., Shiraishi H., Nakagawa M., Takamura N. (2020) Combined impact of pesticides and other environmental stressors on animal diversity in irrigation ponds. PLoS ONE, 15(7), e0229052

Katoh K., Yoshikawa T., Kamijo T., Higuchi H. (2020) Relationship between vegetation structure and avian communities on Miyakejima Island, Japan, 13 years after a major volcanic eruption. Pacific Science, 74, 1-18

Kim J.Y., Nishihiro J. (2020) Responses of lake macrophyte species and functional traits to climate and land use changes. Science of The Total Environment, 736, 139628

Kitano Y.F., Hongo C., Yara Y., Sugihara K., Kumagai N.H., Yamano H. (2020) Data on coral species occurrences in Japan since 1929. Ecological Research, 35, 975-985

Kobayashi S., Kinjo T., Kuroda Y., Kinjo M., Okawara Y., Izawa M., Onuma M., Haga A., Nakaya Y., Nagamine T. (2020) Predation on Endangered Species by Cats in the Northern Forests of Okinawa-Jima Island, Japan. Mammal Study, 45, 63-70

Komine H., Fukasawa K., Akasaka M., Watari Y., Iwai N., Kaji K. (2020) Rapid behavioural responses of native frogs caused by past predation pressure from invasive mongooses. Journal of Zoology, 310, 126-134

Kon T., Omori Y., Fukuta K., Wada H., Watanabe M., Chen Z., Iwasaki M., Mishina T., Matsuzaki S.S., Yoshihara D., Arakawa J., Kawakami K., Toyoda A., Burgess S.M., Noguchi H., Furukawa T. (2020) The genetic basis of morphological diversity in domesticated goldfish. Current Biology, 30, 1-15

Kubo T., Uryu S., Yamano H., Tsuge T., Yamakita T., Shirayama Y. (2020) Mobile phone network data reveal nationwide economic value of coastal tourism under climate change. Tourism Management, 77, 104010

Kubota T., Kuroda H., Watanabe M., Takahashi A., Nakazato R., Tarui M., Matsumoto S., Nakagawa K., Numata Y., Ouchi T., Hosoi H., Nakagawa M., Shinohara R., Kajino M., Fukushima K., Igarashi Y., Imamura N., Katata G. (2020) Role of advection in atmospheric ammonia: A case study at a Japanese lake basin influenced by agricultural ammonia sources. Atmospheric Environment, 243, 117856

Lau A.C.C., Qiu Y., Mohamed Moustafa M.A., Nakao R., Shimozuru M., Onuma M., Mohd-Azlan J., Tsubota T. (2020) Detection of Borrelia burgdorferi Sensu Lato and Relapsing Fever Borrelia in Feeding Ixodes Ticks and Rodents in Sarawak, Malaysia: New Geographical Records of Borrelia yangtzensis and Borrelia miyamotoi. Pathogens, 9, 846

Lu X., Ono E., Lu S., Zhang Y., Teng P., Aono M., Shimizu Y., Hosoi F., Omasa K. (2020) Reconstruction method and optimum range of camera-shooting angle for 3D plant modeling using a multi-camera photography system. Plant Methods, 16, 118

Mabuchi K., Nishida K. (2020) A DNA mini-barcoding system for endangered unionid mussels in the Lake Biwa system in Japan. Conservation Genetics Resources, 12, 581-584

Mabuchi K., Nishida K., Nakajima N. (2020) The complete mitochondrial genome of Silurus lithophilus, a catfish endemic to Lake Biwa, Japan. Mitochondrial DNA Part B Resources, 5, 1311-1312

Maebara Y., Tamaoki M., Iguchi Y., Nakahama N., Hanai T., Nishino A., Hayasaka D. (2020) Genetic Diversity of Invasive Spartina alterniflora Loisel. (Poaceae) Introduced Unintentionally Into Japan and Its Invasion Pathway. Frontiers in Plant Science, 11, 556039

Maeda T., Sakamoto Y. (2020) Range expansion of the tracheal mite Acarapis woodi (Acari: Tarsonemidae) among Japanese honey bee, Apis cerana japonica, in Japan. Experimental and Applied Acarology, 80, 477-490

Mameno K., Kubo T. (2020) Tourist intentions to donate to non-lethal feral cat management at a potential natural World Heritage site in Japan. Human Dimensions of Wildlife, 26, 99-114

Matsumoto T.K., Hirobe M., Akaji Y., Miyazaki Y. (2020) Population structures and spatial patterns of two unpalatable Arisaema species (Araceae) with and without clonal reproduction in a riparian forest intensively grazed by Sika deer. Journal of Forestry Research, 31, 155-162

Matsuzaki R., Kawachi M., Nozaki H., Nohara S., Suzuki I. (2020) Sexual reproduction of the snow alga Chloromonas fukushimae (Volvocales, Chlorophyceae) induced using cultured materials. PLoS One, 15, e0238265

Matsuzaki S.S., Lathrop R.C., Carpenter S.R., Walsh J.R., Zanden M.J.V., Gahler M.R., Stanley E.H. (2020) Climate and food web effects on the spring clear‐water phase in two north-temperate eutrophic lakes. Limnology and Oceanography, 66, 30-46

Matsuzaki S.S., Tanaka A., Kohzu A., Suzuki K., Komatsu K., Shinohara R., Nakagawa M., Nohara S., Ueno R., Satake K., Hayashi S. (2020) Seasonal dynamics of the activities of dissolved ¹³⁷Cs and the ¹³⁷Cs of fish in a shallow, hypereutrophic lake: links to bottom-water oxygen concentrations. Science of the Total Environment, 761, 143257

Mitsui S., Kubo T., Shoji Y. (2020) Understanding residents' perceptions of nature and local economic activities using an open-ended question before protected area designation in Amami Islands, Japan. Journal for Nature Conservation, 56, 125857

Nakahama N., Furuta T., Ando H., Suzuki S., Takayanagi A., Isagi Y. (2020) DNA meta-barcoding revealed that sika deer foraging strategies vary with season in a forest with degraded understory vegetation. Forest Ecology and Management, 484, 118637

Nakajima N., Nishizawa T., Aono M., Tamaoki M., Saji H. (2020) Occurrence of spilled genetically modified oilseed rape growing along a Japanese roadside over 10 years. Weed Biology Management, 20, 139-146

Nakamura N., Kayanne H., Takahashi Y., Sunamura M., Hosoi G., Yamano H. (2020) Anthropogenic anoxic history of the Tuvalu Atoll recorded as annual black bands in coral. Scientific Reports, 10, 7338

Nakamura Y., Tuji A., Makino W., Matsuzaki S.S., Nagata N., Nakagawa M., Takamura N. (2020) Feeding ecology of a mysid species, Neomysis awatschensis in the Lake Kasumigaura: combining approach with microscopy, stable isotope analysis and DNA metabarcoding. Plankton and Benthos Research, 15, 44-54

Nishimoto M., Miyashita T., Yokomizo H., Matsuda H., Imazu T., Takahashi H., Hasegawa M., Fukasawa K. (2020) Spatial optimization of invasive species control informed by management practices. Ecological Applications, 31, e02261

Ogata M., Ishii H., Onuma M. (2020) Characterization of eight polymorphic microsatellite DNA markers and mitochondrial cytochrome c oxidase subunit II gene in Bali myna Leucopsar rothschildi. International Zoo Yearbook, 54, 165-173

Ogden R., Fukuda T., Funo T., Komatsu M., Maeda T., Meredith A., Miura M., Nataukawa H., Onuma M., Osafune Y., Saito K., Sato Y., Thompson D., Murayama M. (2020) Japanese golden eagle conservation science: current status and future needs. Japanese Journal of Zoo and Wildlife Medicine, 25, 9-28

Orimoto A., Katayama M., Tani T., Ito K., Eitsuka T., Nakagawa K., Inoue-Murayama M., Onuma M., Kiyono T., Fukuda T. (2020) Primary and immortalized cell lines derived from the Amami rabbit (Pentalagus furnessi) and evolutionally conserved cell cycle control with CDK4 and Cyclin D1. Biochemical and Biophysical Research Communications, 525, 1046-1053

Osawa T., Ueno Y., Nihida T., Nishihiro J. (2020) Do both habitat and species diversity provide cultural ecosystem services? A trial using geo-tagged photos. Nature Conservation, 38, 61-77

Ota, S., Yamaguchi, H., Vanel, F., Fuchida, S., Koshikawa, H., Yamagishi, T., Yamamoto, H., Kawachi, M. (2020) Differential heavy metal sensitivity in seven algal species from the NIES culture collection based on delayed fluorescence assays. Phycological Research, 68, 41-49

Rogers T.L., Munch S.B., Stewart S.D., Palkovacs E.P., Giron-Nava A., Matsuzaki S.S., Symons C.C. (2020) Trophic control changes with season and nutrient loading in lakes. Ecology Letters, 23, 1287-1297

Sakuma A., Yamano H. (2020) Satellite Constellation Reveals Crop Growth Patterns and Improves Mapping Accuracy of Cropping Practices for Subtropical Small-Scale Fields in Japan. Remote Sensing, 12, 2419

Sano K., Matsukami H., Suzuki G., Htike N.T.T., Morishita M., Tin-Tin-Win-Shwe, Hashimoto S., Kawashima T., Isobe T., Nakayama S.F., Tsukahara S., Maekawa F. (2020) Estrogenic action by tris(2,6-dimethylphenyl) phosphate impairs the development of female reproductive functions. Environment International, 138, 105662

Sasaki K., Hotes S., Kadoya T., Yoshioka A., Wolter V. (2020) Landscape associations of farmland bird diversity in Germany and Japan. Global Ecology and Conservation, 21, e00891

Sato M., Ebihara T., Satake K., Kojima S., Fukumori H., Angsupanich S. (2020) Distributions and Variations of Two Estuarine Species of Composetia (Annelida: Nereididae) in the Ryukyu Islands, Southern Japan, with a New Record of Composetia tokashikiensis from Thailand. Species Diversity, 25, 25-38

Sawada A., Ando H., Takagi M. (2020) Evaluating the existence and benefit of major histocompatibility complex-based mate choice in an isolated owl population. Journal of Evolutionary Biology, 33, 762-772

Senzaki M., Kadoya T., Francis C.D. (2020) Direct and indirect effects of noise pollution alter biological communities in and near noise-exposed environments. Proceedings of the Royal Society B, 287

Stockwell J.D., Doubek J.P., Adrian R., Anneville O., Carey C.C., Carvalho L., De Senerpont Domis L.N., Dur G., Frassl M.A., Grossart H.P., Ibelings B.W., Lajeuness M.J., Lewandowska A.M., Llames M.E., Matsuzaki S.S., Nodine E.R., Noges P., Patil V.P., Pomati F., Rinke K., Rudstam L.G., Rusak J.A., Salmaso N., Seltmann C.T., Straile D., Thackeray S.J., Thiery W., Urrutia-Cordero P., Venail P, Verburg P, Woolway R.I., Zohary T., Andersen M.R., Bhattacharya R., Hejzlar J, Janatian N., Kpodonu A.T.N.K, Williamson T.J., Wilson H.L. (2020) Storm Impacts on Phytoplankton Community Dynamics in Lakes. Global Change Biology, 26, 2756-2784

Suzuki H., Aoki T., Inomata E., Agatsuma Y., Aoki M.N. (2020) Effects of breakwater restoration work following the subsidence caused by the 2011 Tohoku Earthquake on the subtidal kelp population. Phycological Research, 69, 3-11

Suzuki H., Kubo Y., Inomata E., Agatsuma Y., Aoki N.M. (2020) Effects of herbivorous gastropod grazing on the sedimentation and succession of subtidal macroalgal assemblages. Marine Ecology Progress Series, 656, 123-138

Suzuki T., Ikeda T. (2020) Invasive raccoon management systems and challenges in regions with active control. BMC Ecology, 20, 68

Tagane S., Ngoc N.V., Binh H.T., Nagahama A., Zhang M., Cuong T.Q., Son L.V., Dang V.S., Toyama H., Komada N., Nagamasu H., Yahara T. (2020) Fifteen new species for the flora of Bidoup-Nui Ba National Park, southern highland of Vietnam. Acta Phytotaxonomica et Geobotanica, 71, 201-229

Takeuchi Y, Kikuchi S., Diway B. (2020) Albinism and inbreeding depression in seedlings of the tropical tree, Shorea laxa. Journal of Forest Research, 25, 413-419

Toyama H., Aung M., Tagane S., Naiki A., Suddee S., Nagamasu H., Nagahama A., Win S., Tanaka N., Yahara T. (2020) Contributions to the Flora of Myanmar V: a new record of Mallotus tokiae (Euphorbiaceae) with the description of flower morphology from Lampi Island. Thai Forest Bulletin (Botany), 48, 1-6

Toyama H., Bessho K., Huang L., Hirota K.S., Kano Y., Mase K., Sato T., Naiki A., Li J., Shimatani Y., Yahara T. (2020) The effects of water pollution on the phylogenetic community structure of aquatic plants in the East Tiaoxi River, China. Freshwater Biology, 65, 632-645

Tsuchiya K., Komatsu K., Shinohara R., Imai A., Matsuzaki S.S., Ueno R., Kuwahara V.S., Kohzu A. (2020) Variability of benthic methane‐derived carbon along seasonal, biological, and sedimentary gradients in a polymictic lake. Limnology and Oceanography, 65, 3017-3031

Yamaguchi H., Suzuki S., Kawachi M. (2020) Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiology Resource Announcements, 9, e00052-20

Yamaguchi H., Suzuki S., Osana Y., Kawachi M. (2020) Genomic characteristics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa NIES-102. Journal of Genomics, 8, 1-6

Yamano H., Inoue T., Baba S. (2020) Mangrove development and carbon storage on an isolated coral atoll. Environmental Research Communications, 2, 065002

Yamano H., Sakuma A., Harii S. (2020) Coral-spawn slicks: Reflectance spectra and detection using optical satellite data. Remote Sensing of Environment, 251, 112058

Ye F., Kameyama S. (2020) Long-term spatiotemporal changes of 15 water-quality parameters in Japan: An exploratory analysis of countrywide data during 1982-2016. Chemosphere, 242, 125245

Yoshida K. (2020). Predicting changes in ecosystems after eradication of invasive species through computer simulations. Global Environmental Research, 23, 45-51

Yoshida M.A., Totsu K., Sato K., Mabuchi K. (2020) Underwater video and still-image dataset of fishes and other aquatic animals in Lake Biwa, Japan, observed via carp-mounted video loggers. Ecological Research, 35, 1001-1008

Yoshioka A., Matsushima N., Jingu S., Kumada N., Yokota R., Totsu K., Fukasawa K. (2020) Acoustic monitoring data of anuran species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident. Ecological Research, 35, 765-772

Yoshioka A., Shimizu A., Oguma H., Kumada N., Fukasawa K., Jingu S., Kadoya T. (2020) Development of a camera trap for perching dragonflies: a new tool for freshwater environmental assessment. PeerJ, 8, e9681

Zagarese H.E., Sagrario M.G., Wolf-Gladrow D., Noges P., Noges T., Kangur K., Matsuzaki S.S., Kohzu A., Vanni M.J., Ozkundakci D., Echaniz S.A., Vignatti A., Grosman F., Sanzano P., Dam B.V., Knoll L.B. (2020) Patterns of CO₂ concentration and inorganic carbon limitation of phytoplankton biomass in agriculturally eutrophic lakes. Water Research, 190, 116715

• 2019

Akaji Y., Fujiyoshi K., Wu C., Hattori I., Hirobe M., Sakamoto K. (2019) Survival and recruitment of Sasa kurilensis culms in response to local light conditions in a cool temperate forest. Journal of Forest Research, 24, 365-370

Akaji Y., Inoue T., Tomimatsu H., Kawanishi A. (2019) Photosynthesis, respiration, and growth patterns of Rhizophora stylosa seedlings in relation to growth temperature. Trees - Structure and Function, 33, 1041-1049

Amagai Y., Kudo G. (2019) Responses of photochemical efficiency and shoot growth of alpine dwarf-pine Pinus pumila to experimental warming, shading, and defoliation in Japan. Alpine Botany, 129, 43-52

Ando H. (2019) Genetic and ecological conservation issues for oceanic island birds, revealed by a combination of the latest molecular techniques and conventional field work. Ecological Research, 34, 255-264

Aoyagi T., Kashiwabara Y., Kurasawa H., Amachi S., Nakajima N., Hori T., Yamamura S. (2019) Draft genome sequence of a novel lactate-fermenting bacterial strain of the family Sporomusaceae within the class Negativicutes. Microbiology Resource Announcements, 8, e01735-18

Cazelles K., Bartley T., Guzzo M.M., Brice M.H., MacDougall A.S., Bennett J.R., Esch E.H., Kadoya T., Kelly J., Matsuzaki S.S., Nilsson K.A., McCann K.S. (2019) Homogenization of freshwater lakes: recent compositional shifts in fish communities are explained by gamefish movement and not climate change. Global Change Biology, 25, 4222-4233

Dinh T.T., Kajikawa C., Akaji Y., Yamada K., Matsumoto T.K., Makimoto T., Miki N.H., Hirobe M., Sakamoto K. (2019) Stump sprout dynamics of Quercus serrata Thunb. and Q. acutissima Carruth. four years after cutting in an abandoned coppice forest in western Japan. Forest Ecology and Management, 435, 45-56

Doi H., Fukaya K., Oka S., Sato K., Kondoh M., Miya M. (2019) Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model. Scientific Reports, 9, 3581

Fujita T., Ariga T., Hijioka Y., Fukasawa K., Ohashi H. (2019) Assessing the potential impacts of climate and population change on land-use changes projected to 2100 in Japan. Climate Research, 79, 139-149

Fukami H., Iwao K., Kumagai N.H., Morita M., Isomura N. (2019) Maternal inheritance of F1 hybrid morphology and colony shape in the coral genus Acropora. PeerJ, 7, e6429

Fukasawa K., Akasaka T. (2019) Long-lasting effects of historical land use on the current distribution of mammals revealed by ecological and archaeological patterns. Scientific Reports, 9, 10697

Fukumori K., Ishida S., Shimoda M., Takenaka A., Akasaka M., Nishihiro J., Takamura N., Kadoya T. (2019) Incorporating species population dynamics into static prioritization: targeting species undergoing rapid change. Journal of Applied Ecology, 56, 450-458

Fukushima M., Harada C., Yamakawa A., Iizuka T. (2019) Anadromy sustained in the artificially land-locked population of Sakhalin taimen in northern Japan. Environmental Biology of Fishes, 102, 1219-1230

Furihata S., Kasai A., Hidaka K., Ikegami M., Ohnishi H., Goka K. (2019) Ecological risks of insecticide contamination in water and sediment around off-farm irrigated rice paddy fields. Environmental Pollution, 251, 628-638

Harada M., Ito K., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S. (2019) Genomic analysis of Pseudomonas sp. strain SCT, an iodate-reducing bacterium isolated from marine sediment, reveals a possible use for bioremediation. G3: Genes, Genomes, Genetics, 9, 1321-1329

Hashimoto K., Eguchi Y., Oishi H., Tazunoki Y., Tokuda M., Sanchez‐Bayo F., Goka K., Hayasaka D. (2019) Effects of a herbicide on paddy predatory insects depend on their microhabitat use and an insecticide application. Ecological Applications, 29, e01945

Ikeda T., Kuninaga N., Suzuki T., Ikushima S., Suzuki M. (2019) Tourist-wild boar (Sus scrofa) interactions in urban wildlife management. Global Ecology and Conservation, 18, e00617

Ikehara T., Kuniyoshi J., Yamaguchi H., Tanabe Y., Sano T., Yoshimoto M., Oshiro N., Nakashima S., Yasumoto-Hirose M. (2019) First Report of Microcystis Strains Producing MC-FR and -WR Toxins in Japan. Toxins, 11, 521

Ikegami M., Wandrag E., Duncan R.P., Hulme P.E. (2019) Length of cultivation determines the richness of native and non-native weeds in crop fields worldwide. Biological Invasion, 21, 363-375

Inoue T., Khozu A., Shimono A. (2019) Tracking the route of atmospheric nitrogen to diazotrophs colonizing buried mangrove roots. Tree Physiology, 39, 1896-1906

Ishihama F., Takenaka A., Yokomizo H., Kadoya T. (2019) Evaluation of the ecological niche model approach in spatial conservation prioritization. PLOS ONE, 14, e0226971

Ishiniwa H., Okano T., Yoshioka A., Tamaoki M., Yokohata Y., Shindo J., Azuma N., Nakajima N., Onuma M. (2019) Concentration of radioactive materials in small mammals collected from a restricted area in Fukushima, Japan since 2012. Ecological Research, 34, 7

Kashiyama Y., Yokoyama A., Shiratori T., Hess S., Not F., Bachy C., Gutierrez-Rodriguez A., Kawahara J., Suzaki T., Nakazawa M., Ishikawa T., Maruyama M., Wang M., Chen M., Gong Y., Seto K., Kagami M., Hamamoto Y., Honda D., Umetani T., Shihongi A., Kayama M., Matsuda T., Taira J., Yabuki A., Tsuchiya M., Hirakawa Y., Kawaguchi A., Nomura M., Nakamura A., Namba N., Matsumoto M., Tanaka T., Yoshino T., Higuchi R., Yamamoto A., Maruyama T., Yamaguchi A., Uzuka A., Miyagishima S., Tanifuji G., Kawachi M., Kinoshita Y., Tamiaki H. (2019) Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. The ISME Journal, 13, 1899-1910

Katayama M., Kiyono T., Kuroda K., Ueda K., Onuma M., Shirakawa H., Fukuda T. (2019) Rat-derived feeder cells immortalized by expression of mutant CDK4, cyclin D, and telomerase can support stem cell growth. Biochim Biophys Acta Mol Cell Res, 1866, 945-956

Katayama M., Kiyono T., Ohmaki H., Eitsuka T., Endoh D., Inoue-Murayama M., Nakajima N., Onuma M., Fukuda T. (2019) Extended proliferation of chicken and Okinawa rail derived fibroblasts by expression of cell cycle regulators. Journal of Cellular Physiology, 234, 6709-6720

Kawamori A., Fukaya K., Kitazawa M., Ishiguro M. (2019) A self-excited threshold autoregressive state-space model for menstrual cycles: forecasting menstruation and identifying within-cycle stages based on basal body temperature. Statistics in Medicine, 38, 2157-2170

Kimbara R., Isaka N., Matsuzaki R., Kawai-Toyooka H., Kawachi M., Nozaki H. (2019) Morphological and molecular identification of the dioecious “African species Volvox rousseletii (Chlorophyceae) in the water column of a Japanese lake based on field-collected and cultured materials. PLoS ONE, 14, 1-11

Kim J.Y., Yano T., Nakanishi R., Tagami H., Nishihiro J. (2019) Artificial wave breakers promote the establishment of alien aquatic plants in a shallow lake. Biological Invasions, 21, 1545-1556

Kitazawa M., Yamaura Y., Senzaki M., Kawamura K., Hanioka M., Nakamura F. (2019) An evaluation of five agricultural habitat types for openland birds: abandoned farmland can have comparative values to undisturbed wetland. Ornithological Science, 18, 3-16

Kobayashi S., Kinjo T., Kuroda Y., Kinjo M., Okawara Y., Izawa M. , Onuma M., Haga A., Nakaya Y., Nagamine T. (2019) Predation on endangered species by cats in the northern forests of Okinawa-jima Island. Japan.. Mammal Study, 45, 63-70

Koide D., Ide R., Oguma H. (2019) Detection of autumn leaf phenology and color brightness from repeat photography: Accurate, robust, and sensitive indexes and modeling under unstable field observations. Ecological Indicators, 106, 105482

Koide D., Kadoya T. (2019) Resource amount and cultural legacy affect spatially unbalanced human use of Japan’s non-timber forest products. Ecological Indicators, 97, 204-210

Kubo T., Mieno T., Kuriyama K. (2019) Wildlife viewing: The impact of money-back guarantees. Tourism Management, 70, 49-55

Kubo T., Tsuge T., Abe H., Yamano H. (2019) Understanding island residents' anxiety about impacts caused by climate change using Best-Worst Scaling: A case study of Amami islands, Japan. Sustainability Science, 14, 131-138

Kubo Y., Satoh S., Suzuki H., Kinoshita T., Nakajima N. (2019) Characterization of Ethylene-mediated Curling of Japanese Radish (Raphanus sativus var. longipinnatus) Cotyledons. HortScience, 54, 1896-1901

Kubo, T., Uryu, S., Yamano, H., Tsuge, T., Yamakita, T., Shirayama, Y. (2019) Mobile phone network data reveal nationwide economic value of coastal tourism under climate change. Tourism Management, 77, 104010. DOI: 10.1016/j.tourman.2019.104010

Macdonald D.W., Bothwell H.M., Kaszta Z., Ash E., Bolongon G., Burnham D., Can O.E., Campos-Arceiz A., Channa P., Clements G.R., Hearn A.J., Hedges L., Htun S., Kamler J.F., Kawanishi K., Macdonald E.A., Mohamad S.W., Moore J., Naing H., Onuma M., Penjor U., Rasphone A., Rayan D.M., Ross J., Singh P., Tan C.K.W., Wadey J., Yadav B.P., Cushman S.A. (2019) Multi‐scale habitat modelling identifies spatial conservation priorities for mainland clouded leopards (Neofelis nebulosa). Diversity and Distributions, 25, 1639-1654

Makino T., Matsuzaki R., Suzuki S., Yamaguchi H., Kawachi M., Nozaki H. (2019) Taxonomic re-examination of two NIES strains of “Chlamydomonas” within the Reticulata group of the genus Chloromonas (Volvocales, Chlorophyceae). Microbial Resources and Systematics, 35, 13-23

Matsuzaki R., Nozaki H., Takeuchi N., Hara Y., Kawachi M. (2019) Taxonomic re-examination of “Chloromonas nivalis (Volvocales, Chlorophyceae) zygotes” from Japan and description of C. muramotoi sp. nov.. PLoS one, 14, e0210986

Matsuzaki S.S., Kohzu A., Kadoya T., Watanabe M., Osawa T., Fukaya K., Komatsu K., Kondo N., Yamaguchi H., Ando H., Shimotori K., Nakagawa M., Kizuka T., Yoshioka A., Sasai T., Saigusa N., Matsushita B., Takamura, N. (2019) Role of wetlands in mitigating the tradeoff between crop production and water quality in agricultural landscapes. Ecosphere, 10, e02918
Matsuzaki S.S., Shinohara R., Uchida K., Sasaki T. (2019) Catch diversification provides multiple benefits in inland fisheries. Journal of Applied Ecology, 56, 843-854

McMeans B., Kadoya T., Pool T., Holtgrieve G., Lek S., Kong H., Winemiller K., Elliott V., Rooney N., Laffaille P., McCann K. (2019) Consumer trophic positions respond variably to seasonally fluctuating environments. Ecology, 100, e02570

Nakabayashi A., Yamakita T., Nakamura T., Aizawa H., Kitano Y.F., Iguchi A., Yamano H., Nagai S., Agostini S., Teshima K.M., Yasuda N. (2019) The potential role of temperate Japanese regions as refugia for the coral Acropora hyacinthus in the face of climate change. Scientific Reports, 9, 1892 （External Links）

Nakaji T., Oguma H., Nakamura M., Kachina P., Asanok L., Marod D., Aiba M., Kurokawa H., Kosugi Y., Kassim A.R., Hiura T. (2019) Estimation of six leaf traits of East Asian forest tree species by leaf spectroscopy and partial least square regression. Remote Sensing of Environment, 233, 111381

Nakajima N., Sakamoto Y., Goka K. (2019) Rapid detection of the red fire ant Solenopsis invicta (Hymenoptera: Formicidae) by loop-mediated isothermal amplification. Applied Entomology and Zoology, 54, 319-322

Nakamura M., Kumagai N.H., Tamaoki M., Arita K., Ishii Y., Nakajima N., Yabe T. (2020) Photosynthesis and growth of Ulva ohnoi and Ulva pertusa (Ulvophyceae) under high light and high temperature conditions, and implications for green tide in Japan. Phycological Research, 68, 152-160

Noda A., Kondoh A., Nishihiro J. (2019) Changes in land cover and grassland area over the past 120 years in a rapidly urbanised area in Japan. One Ecosystem, 4, e37669

Nozaki H., Takusagawa M., Misumi O., Mahakham W., Kawachi M. (2019) Morphology, reproduction and taxonomy of Volvox dissipatrix (Chlorophyceae) from Thailand, with a description of Volvox zeikusii sp. nov.. Phycologia, 58, 192-199

Nozaki H., Matsuzaki R., Kashindye B.B., Ezekiel C.N., Shaban S., Kawachi M., Aibara M., Nikaido M. (2019) Morphology, phylogeny, and taxonomy of two species of colonial volvocine green algae from Lake Victoria, Tanzania. PLoS One, 14, e0224269

Oguri E., Tagane S., Dang V.S., Yang C.J., Toyama H., Hop T., Murakami N., Yahara T. (2019) A new species of Gynochthodes (Rubiaceae), G. honbaensis, from Hon Ba Nature Reserve, southern Vietnam. Phytotaxa, 406, 213-217

Ohashi H., Fukasawa K., Ariga T., Matsui T., Hijioka Y. (2019) High-resolution national land use scenarios under a shrinking population in Japan. Transactions in GIS, 23, 786-804

Ohgaki S., Kato T., Kobayashi N., Tanase H., Kumagai N.H., Ishida S., Nakano T., Wada Y., Yusa Y. (2019) Effects of temperature and red tides on sea urchin abundance and species richness over 45 years in Southern Japan. Ecological Indicators, 96, 684-693

Ohmura Y., Takeshita S., Kawachi M. (2019) Photobiont diversity within populations of a vegetatively reproducing lichen, Parmotrema tinctorum, can be generated by photobiont switching. Symbiosis, 77, 59-72

Okada T., Mito Y., Iseri E., Takahashi T., Sugano T., Akiyama Y., Watanabe K., Tanaya T., Sugino H., Tokunaga K., Kubo T., Kuwae T. (2019) Method for the quantitative evaluation of ecosystem services in coastal regions. PeerJ, 6, e6234

Sakamoto H., Suzuki R, Nishizawa N., Matsuda T., Gotoh T. (2019) Effects of Wolbachia/Cardinium infection on the mitochondrial phylogeny of Oligonychus castaneae (Acari; Tetranychidae). Journal of Economic Entomology, 112, 883-893

Sakamoto H., Tanaka S., Hata T. (2019) Identification of vibrational signals emitted by embryos of the migratory locust Locusta migratoria (Orthoptera: Acrididae) that induce synchronous hatching. European Journal of Entomology, 116, 258-268

Sakamoto Y., Hayashi T., Inoue M.N., Ohnishi H., Kishimoto T., Goka K. (2019) Effects of fipronil on non-target ants and other invertebrates in program of eradication of the Argentine ant, Linepithema humile. Sociobiology, 66, 227-238

Sakamoto Y., Maeda T., Yoshiyama M., Konno F., Pettis J.S. (2019) Differential autogrooming response to the tracheal mite Acarapis woodi by the honey bees Apis cerana and Apis mellifera. Insectes Sociaux, 67, 95-102

Sato Y., Tsuda Y., Sakamoto H., Egas M., Gotoh T., Saito Y., Zhang Y.X., Lin J.Z., Chao J.T., Mochizuki A. (2019) Phylogeography of lethal male fighting in a social spider mite. Ecology and Evolution, 9, 1590-1602

Sera Y., Hanamata S., Sakamoto S., Ono S., Kaneko K., Mitsui Y., Koyano T., Fujita N., Sasou A., Masumura T., Saji H., Nonomura K., Mitsuda N., Mitsui T., Kurusu T., Kuchitsu K. (2019) Essential roles of autophagy in metabolic regulation in endosperm development during rice seed maturation. Scientific Reports, 9, 18544

Shimizu Y., Lu Y., Aono M., Omasa K. (2019) A novel remote sensing-based method of ozone damage assessment effect on Net Primary Productivity of various vegetation types. Atmospheric Environment, 217, 116947

Shiratori T., Suzuki S., Kakizawa Y., Ishida K. (2019) Phagocytosis-like cell engulfment by a planctomycete bacterium. Nature Communications, 10, 5529

Shutoh K., Yamanouchi T., Kato S., Yamagishi H., Ueno Y., Hiramatsu S., Nishihiro J., Shiga T. (2019) The aquatic macrophyte flora of a small pond revealing high species richness in the Aomori Prefecture, Japan. Journal of Asia-Pacific Biodiversity, 12, 448-458

Suzuki S., Kataoka T., Watanabe T., Yamaguchi H., Kuwata A., Kawachi M. (2019) Depth-dependent transcriptomic response of diatoms during spring bloom in the western subarctic Pacific Ocean. Scientific Reports, 9, 14559

Suzuki S., Yamaguchi H., Kawachi M. (2019) Draft Genome Sequences of Three Filamentous Cyanobacterial Strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiology Resource Announcements, 8, e00605-19

Suzuki S., Yamaguchi H., Kawachi M. (2019) The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46. Journal of Genomics, 7, 56-59

Suzuki T., Ikeda T. (2019) Challenges in managing invasive raccoons in Japan. Wildlife Research, 46, 476-483

Tada M. (2019) Combining poetry and science to create scientific “thesis poetry” as a tool for the communication of science. Science Communication, 41, 391-393

Takano T., Higuchi S., Ikegaya H., Matsuzaki R., Kawachi M., Takahashi F., Nozaki H. (2019) Identification of 13 Spirogyra species (Zygnemataceae) by traits of sexual reproduction induced under laboratory culture conditions. Scientific reports, 9, 7458

Tanabe Y., Yamaguchi H. (2019) Draft genome sequence of Microcystis aeruginosa NIES-4285, isolated from brackish water (Lake Abashiri, Japan). Microbiology Resource Announcements, 8, e00001-19

Tanabe Y., Yamaguchi H., Sano T., Kawachi M. (2019) A novel salt-tolerant genotype illuminates the sucrose gene evolution in freshwater bloom-forming cyanobacterium Microcystis aeruginosa. FEMS Microbiology Letters, 366, fnz190

Taninaka H., Bernardo L.P.C., Saito Y., Nagai S., Ueno M., Kitano Y., Nakamura T., Yasuda N. (2019) Limited fine-scale larval dispersal of the threatened brooding corals Heliopora spp. as evidenced by population genetics and numerical simulation. Conservation Genetics, 20, 1449-1463

Teng P., Ono E., Zhang Y., Aono M., Shimizu Y., Hosoi F., Omasa K. (2019) Estimation of Ground Surface and Accuracy Assessments of Growth Parameters for A Sweet Potato Community in Ridge Cultivation. Remote Sencing, 11, 1487-1504

Tani T., Eitsuka T., Katayama M., Nagamine T., Nakaya Y., Suzuki H., Kiyono T., Nakagawa K., Inoue-Murayama M., Onuma M., Fukuda T. (2019) Establishment of immortalized primary cell from the critically endangered Bonin flying fox (Pteropus pselaphon). PLoS ONE, 14, e0221364

Tsuboi S., Yamaguchi H., Fuchida S., Koshikawa H., Kawachi M. (2019) Short-Term changes in marine prokaryotic and eukaryotic microalgal communities exposed to the leachate of a seafloor hydrothermal sulfide. Water, Air, & Soil Pollution, 230, 175

Tsuchida K., Yamaguchi A., Kanbe Y., Goka K. (2019) Reproductive Interference in an Introduced Bumblebee: Polyandry may Mitigate Negative Reproductive Impact. Insects, 10, 59

Tsuchiya K., Sano T., Tomioka N., Kohzu A., Komatsu K., Shinohara R., Takamura N., Nakagawa M., Sugai Y., Kuwahara V.S., Toda T., Fukuda H., Imai A. (2019) Seasonal variability and regulation of bacterial production in a shallow eutrophic lake. Limnology and Oceanography, 64, 2441-2454

Tsuji H., Tanaka A., Komatsu K., Kohzu A., Matsuzaki S.S., Hayashi S (2019) Vertical/spatial movement and accumulation of 137Cs in a shallow lake in the initial phase after the Fukushima Daiichi nuclear power plant accident. Applied Radiation and Isotopes, 147, 59-69

Vitule J.R.S., Occhi T.V.T., Kang B., Matsuzaki S.S., Bezerra L.A., Daga V.S., Faria L., Frehse F., Pereira F.W., Padial A.A. (2019) Intra-country introductions unraveling global hotspots of alien freshwater fish species. Biodiversity and Conservation, 28, 3037-3043

Xu J., Molinos J.G., Su G., Matsuzaki S.S., Akasaka M., Zhang H., Heino J. (2019) Cross-taxon congruence of multiple diversity facets of freshwater assemblages is determined by large-scale processes across China. Freshwater Biology, 64, 1492-1503

Yamada K., Katsura H., Noel M.H., Ichinomiya M., Kuwata A., Sato S., Yoshikawa S. (2019) Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles). Journal of Phycology, 55, 196-203

Yamamura S., Kurasawa H., Kashiwabara Y., Hori T., Aoyagi T., Nakajima N., Amachi S. (2019) Soil microbial communities involved in reductive dissolution of arsenic from arsenate-laden minerals with different carbon sources. Environmental Science & Technology, 53, 12398-12406

Yamano H., Inoue T., Adachi H., Tsukaya K., Adachi R., Baba S. (2019) Holocene sea-level change and evolution of a mixed coral reef and mangrove system at Iriomote Island, southwest Japan. Estuarine, Coastal and Shelf Science, 220, 166-175

Ye L., Chang C.W., Matsuzaki S.S., Takamura N., Widdicombe C.E., Hsieh C.H. (2019) Functional diversity promotes phytoplankton resource use efficiency. Journal of Ecology, 107, 2353-2363

Yoshida K., Hata K., Kawakami K., Hiradate S., Osawa T., Kachi N. (2019). Ecosystem changes following the eradication of invasive species: evaluation of various eradication scenarios by computer simulation. Ecological Modelling, 413, 108831

Yoshida T., Mabuchi K., Motomura H. (2019) Rhabdamia novaluna, a new species of cardinalfish (Perciformes: Apogonidae) from the western Pacific Ocean, with comments on the synonymy of Rhabdamia gracilis. Ichthyological Research, 66, 129-139

Yoshikawa T., Kawakami K., Masaki T. (2019) Allometric scaling of seed retention time in seed dispersers and its application to estimation of seed dispersal potentials of theropod dinosaurs. Oikos, 128, 836-844

Yuasa T., Kawachi M., Horiguchi T., Takahashi O. (2019) Chrysochromulina andersonii sp. nov. (Prymnesiophyceae), a new flagellate haptophyte symbiotic with radiolarians. Phycologia, 58, 211-224

Zhao J.L., Ikegami M., Werth S., Gugger P., Sork V.L. (2018) Historical interactions are predicted to be disrupted under future climate change: The case of lace lichen and valley oak. Journal of Biogeography, 46, 19-29

• 2018

Akasaka M., Higuchi S., Takamura N. (2018) Landscape- and local-scale actions are essential to conserve regional macrophyte biodiversity. Frontiers in Plant Science, 9, 599

Amagai Y., Kudo G., Sato K. (2018) Changes in alpine plant communities under climate change: dynamics of snow‐meadow vegetation in northern Japan over the last 40 years. Applied Vegetation Science, 21, 561-571

Ando H., Fujii C., Kawanabe M., Ao Y., Inoue T., Takenaka A. (2018) Evaluation of plant contamination in metabarcoding diet analysis of a herbivore. Scientific Reports, 8, 15563

Ando H., Tsuda Y., Kaneko S., Kubo T. (2018) Historical and recent impacts on genetic structure of island rabbit. Journal of Wildlife Management, 82, 1658-1667

Chan E.W.C., Tangha J., Baba S., Chan H.T., Kainuma M., Inoue T. (2018) Caesalpinia crista: A coastal woody climber with promising therapeutic values. Journal of Applied Pharmaceutical Science, 8, 133-140

Dinh T.T., Akaji Y., Matsumoto T., Toribuchi T., Makimoto T., Hirobe M., Sakamoto K. (2018) Sprouting capacity of Quercus serrata Thunb. and Quercus acutissima Carruth. after cutting canopy trees in an abandoned coppice forest. Journal of Forest Reseach, 23, 287-296

Fuchida S., Ishibashi J., Shimada K., Nozaki T., Kumagai H., Kawachi M., Matsushita Y., Koshikawa H. (2018) Onboard experiment investigating metal leaching of fresh hydrothermal sulfide cores into seawater. Geochemical Transaction, 19, 15

Fujita T., Yamashina C. (2018) Do consumer-mediated negative effects on plant establishment outweigh the positive effects of a nurse plant?. Ecology and Evolution, 8, 3702-3710

Fukuda T., Eitsuka T., Donai K., Kurita M., Saito T., Okamoto H., Kinoshita K., Katayama M., Nitto H., Uchida T., Onuma M., Sone H., Inoue-Murayama M., Kiyono T. (2018) Expression of human mutant cyclin dependent kinase 4, Cyclin D and telomerase extends the life span but does not immortalize fibroblasts derived from loggerhead sea turtle (Caretta caretta). Scientific Reports, 8, 9229

Gouko R., Onuma M., Eitsuka T., Katayama M., Takahashi K., Nakagawa K. , Inoue-Murayama M., Kiyono T., Fukuda T. (2018) Efficient immortalization of cells derived from critically endangered Tsushima leopard cat (Prionailurus bengalensis euptilurus) with expression of mutant CDK4, Cyclin D1, and telomerase reverse transcriptase. Cytotechnology, 70, 1619-1630

Hanioka M., Yamaura Y., Senzaki M., Yamanaka S., Kawamura K., Nakamura F. (2018) Assessing the landscape-dependent restoration potential of abandoned farmland using a hierarchical model of bird communities. Agriculture, Ecosystems & Environment, 265, 217-225

Hanioka M., Yamaura Y., Yamanaka S., Senzaki M., Kawamura K., Terui A., Nakamura F. (2018) How much abandoned farmland is required to harbor comparable species richness and abundance of bird communities in wetland? Hierarchical community model suggests the importance of habitat and landscape variables. Biodiversity and Conservation, 27, 1831-1848

Hiki K., Watanabe H., Nakajima F., Nakajima N., Tobino T. (2018) De novo transcriptome sequencing of an estuarine amphipod Grandidierella japonica exposed to zinc. Marine Genomics. Marine Genomics, 39, 11-14

Hill M.J., Hassall C., Oertli B., Fahrig L., Robson B.J., Biggs J., Samways M.J., Usio N., Takamura N., Krishnaswamy J., Wood P.J. (2018) New policy directions for global pond conservation. Conservation Letters, 11, e12447

Ikegami M., Thomas A.R.J. (2018) Estimate global risks of a forest disease under current and future climates using species distribution model and simple thermal model ? Pine Wilt disease as a model case. Forest Ecology and Management, 409, 343-352

Ikegami M., Wandrag E., Duncan R.P., Hulme P.E. (2018) Length of cultivation determines the richness of native and non-native weeds in crop fields worldwide. Biological Invasion, 21, 363-375

Inoue T., Chan E.W.C., Tangah J., Baba S., Chan H.T., Kainuma M. (2018) Caesalpinia crista: A coastal woody climber with promising therapeutic values. Journal of Applied Pharmaceutical Science , 8, 133-140

Ito K., Harada M., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S. (2018) Genomic Analysis of Rhodococcus sp. Br-6, a Bromate Reducing Bacterium Isolated From Soil in Chiba, Japan. Journal of Genomics, 6, 122-126

Iwatsuki Y., Nakajima K., Yamano H., Otsuki A., Murakami S. (2018) Variation and changes in land-use intensities behind nickel mining: coupling operational and satellite data. Resources, Conservation and Recycling, 134, 361-366

Kadoya T., Gellner G., McCann K.S. (2018) Potential oscillators and keystone modules in food webs. Ecology Letters, 21, 1330-1340

Katayama M., Hirayama T., Tani T., Nishimori K., Onuma M., Fukuda T. (2018) Chick derived induced pluripotent stem cells by the poly-cistronic transposon with enhanced transcriptional activity. Journal of Cellular Physiology, 233, 990-1004

Kawatsu K., Kishi S. (2018) Identifying critical interactions in complex competition dynamics between bean beetles. Oikos, 127, 553-560

Kidera N., Kadoya T., Yamano H., Takamura N., Ogano T., Wakabayashi T., Takezawa M., Hasegawa M. (2018) Hydrological effects of paddy improvement and abandonment on amphibian populations; long-term trends of the Japanese brown frog, Rana japonica. Biological Conservation, 219, 96-104

Kim J.Y., Noda A., Im R.Y., Nishihiro J. (2018) Web search volume as a surrogate of public interest in biodiversity: a case study of Japanese red list species. Ecosystem Health and Sustainability, 4, 289-298

Kitagawa R., Koide D., Mori A.S. (2018) Different trends in phylogenetic and functional structure of plant communities along an elevation gradient. Ecological Research, 33, 1233-1243

Kobayashi S., Morita Y., Nakaya Y., Nagamine T., Onuma M., Okano T., Haga A., Yamamoto I. , Higa M., Naruse T., Nakamura Y. , Denda T., Izawa M. (2018) Dietary Habits of the Endangered Okinawa Rail. Ornithological Science, 17, 19-35

Koide D., Ito A. (2018) Temporal changes in the relationship between tree-ring growth and net primary production in northern Japan: a novel approach to the estimation of seasonal photosynthate allocation to the stem. Ecological Research, 33, 1275-1287

Komura T., Ando H., Horikoshi K., Suzuki H., Isagi Y. (2018) DNA barcoding reveals seasonal shifts in diet and consumption of deep-sea fishes in wedge-tailed shearwaters. PLoS ONE, 13, e0195385

Kubo T., Shoji Y., Tsuge T., Kuriyama K. (2018) Voluntary contributions to hiking trail maintenance: Evidence from a field experiment in a national park, Japan. Ecological Economics, 144, 124-128

Kumagai N.H., Garcia-Molinos J., Yamano H., Takao S., Fujii M., Yamanaka Y. (2018) Ocean currents and herbivory drive macroalgae-to- coral community shift under climate warming. Proceedings of the National Academy of Sciences of the United States of America, 115, 8990-8995

Kumagai N.H., Yamano H., Sango-Map-Project C. (2018) High-resolution modeling of thermal thresholds and environmental influences on coral bleaching for local and regional reef management. PeerJ, 6, e4382

Kumakura K., Osanai Y., Osa Y., Fujii K., Asakawa M., Ushiyama K., Onuma M., Igarashi H., Endoh D. (2018) Multi-locus exon-primed intron crossing (EPIC) primer design for regional birds and algorithm design for a combination of introns. Japanese Journal of Veterinary Research , 66, 261-272

Mabuchi K., Nishida K., Nakajima N. (2018) Complete F mitochondrial genomes of the Biwa pearl mussel, Hyriopsis schlegelii: the first report from the species' native lake in Japan. Mitochondrial DNA part B Resources, 3, 1294-1295

MacDougall A., Harvey E., McCune J., Nilsson K., Bennett J., Firn J., Bartley T., Grace J., Kelly J., Tunney T., McMeans B., Matsuzaki S.S., Kadoya T., Esch E., Cazelles K., Lester N., McCann K. (2018) Context-dependent interactions and the regulation of species richness in freshwater fish. Nature Communications, 9, 973

Maekawa F., Nagino K., Yang J., Htike N.T.T., Tsukahara S., Ubuka T., Tsutsui K., Kawashima T. (2018) Strain differences in intermale aggression and possible factors regulating increased aggression in Japanese quail. General and Comparative Endocrinology, 256, 63-70

Matsui T., Nakao K., Higa M., Tsuyama I., Kominami Y., Yagihashi T., Koide D., Tanaka N. (2018) Potential impact of climate change on canopy tree species composition of cool-temperate forests in Japan using a multivariate classification tree model. Ecological Research, 33, 289-302

Matsunami M., Endo D., Saitou N., Suzuki H., Onuma M. (2018) Draft genome sequence of Japanese wood mouse, Apodemus speciosus. Data in Brief, 16, 43-46

Matsuzaki R., Nozaki H., Kawachi M. (2018) Taxonomic revision of Chloromonas nivalis (Volvocales, Chlorophyceae) strains, with the new description of two snow-inhabiting Chloromonas species. PLoS ONE, 13, e0193603

Matsuzaki S.S., Suzuki K., Kadoya T., Nakagawa M., Takamura N. (2018) Bottom-up linkages between primary production, zooplankton, and fish in a shallow, hypereutrophic lake. Ecology, 99, 2025-2036

Mitsui S., Kubo T., Yoshida M. (2018) Analyzing the change in long-term information provision on cat management around a World Natural Heritage Site. European Journal Wildlife Research, 64, 9

Mizumoto H., Urabe H., Kanbe T., Fukushima M., Araki, H. (2018) Establishing an environmental DNA method to detect and estimate the biomass of Sakhalin taimen, a critically endangered Asian salmonid. Limnology, 19, 219-227

Nagai S., Akitsu T., Nasahara K.N., Saito T.M., Muraoka H., Ide R., Oguma H., and other 50 researchers (2018) 8 million phenological and sky images from 29 ecosystems from the Arctic to the tropics: the Phenological Eyes Network. Ecological Research, 33, 1091-1092

Nakano Y., Senzaki M., Ishiyama N., Yamanaka S., Miura K., Nakamura F. (2018) Noise pollution alters matrix permeability for dispersing anurans: differential effects among land covers. Global Ecology and Conservation, 16, e00484

Nakaoka M., Sudo K., Namba M., Shibata H., Nakamura F., Ishikawa S., Makino M., Yamano H., Matsuzaki S.S., Yamakita T., Yu X., Hou X., Li X., Brodie J., Kanemoto K., Moran D., Verones F. (2018) TSUNAGARI: A new interdisciplinary and transdisciplinary study toward conservation and sustainable use of biodiversity and ecosystem services. Ecological Research, 33, 35-49

Nakashima Y., Fukasawa K., Samejima H. (2018) Estimating animal density without individual recognition using information derivable exclusively from camera traps. Journal of Applied Ecology, 55, 735-744

Nozaki, H., Ueki, N., Takusagawa, M., Yamashita, S., Misumi, O., Matsuzaki, R., Kawachi, M., Chiang, Y.-R., Wu, J.-T. (2018) Morphology, taxonomy and mating-type loci in natural populations of Volvox carteri in Taiwan. Botanical studies, 59(1), 1-8.Nozaki H., Ueki N., Takusagawa M., Yamashita S., Misumi O., Matsuzaki R., Kawachi M., Chiang Y.R., Wu J.T. (2018) Morphology, taxonomy and mating-type loci in natural populations of Volvox carteri in Taiwan. Botanical studies, 59, 10

Oishi Y., Oguma H., Tamura A., Nakamura R., Matsunaga T. (2018) Animal Detection Using Thermal Images and Its Required Observation Conditions. Remote sensing, 10, 1050

Phomikong P., Udduang S., Fukushima M., Srichareondham B., Rattanachamnong D., Jutagate T. (2018) Larval fish assemblage patterns in three tributaries of Mekong River in Thailand. Indian Journal of Fisheries, 65, 1-15

Ryder O.A., Onuma M. (2018) Viable Cell Culture Banking for Biodiversity Characterization and Conservation. Annual Review of Animal Biosciences, 6, 83-98

Sakaguchi A., Inaba R., Sasa K., Matsunaka T., Hosoya S., Takahashi T., Honda M., Yamano H., Sasaki K., Yamasaki S., Watanabe T., Sueki K. (2018) Reconstruction of anthropogenic 129I temporal variation in the Japan Sea using a coral core sample. Marine Environmental Research, 142, 91-99

Segawa T., Matsuzaki R., Takeuchi N., Akiyoshi A., Navarro F., Sugiyama S., Yonezawa T., Mori H. (2018) Bipolar dispersal of red-snow algae phylotypes. Nature Communications, 9, 3094

Sato Y., Sakamoto H., Gotoh T., Saito Y., Chao J.T, Egas M., Mochizuki A. (2018) Patterns of reproductive isolation in a haplodiploid - strong post-mating, prezygotic barriers among three forms of a social spider mite. Journal of Evolutionary Biology, 31, 866-881

Senzaki M., Kadoya T., Francis C.D., Ishiyama N., Nakamura F. (2018) Suffering in receivers: negative effects of noise persist regardless of experience in female anurans. Functional Ecology, 32, 2054-2064

Shimoji H., Kikuchi T., Ohnishi H., Kikuta N., Tsuji K. (2018) Social enforcement depending on the stage of colony growth in an ant. Proc. R. Soc. B., 285, 20172548

Shinohara R., Ouellette L., Nowell P., Parsons C.T., Matsuzaki S.S., Voroney R.P. (2018) The composition of particulate phosphorus: A case study of the Grand River, Canada. Journal of Great Lakes Research, 44, 527-534

Shoguchi E., Beedessee G., Tada I., Hisata K., Kawashima T., Takeuchi T., Arakaki N., Fujie M., Koyanagi R., Roy M.C., Kawachi M., Hidaka M., Satoh N., Shinzato C. (2018) Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC genomics, 19, 458

Soga M., Gaston K.J., Kubo T. (2018) Cross-generational decline in childhood experiences of neighborhood flowering plants in Japan. Landscape and Urban Planning, 174, 55-62

Suetsugu K., Yiing L.C., Naiki A., Tagane S., Takeuchi Y., Toyama H., Yahara T. (2018) Lecanorchis sarawakensis (Orchidaceae, Vanilloideae), a new mycoheterotrophic species from Sarawak, Borneo. Phytotaxa, 338, 135-139

Sun L.W., Jiang W.J., Zhang J.Y., Wang W.Q., Du Y., Sato H., Kawachi M., Yu R. (2018) Identification and detection sensitivity of Microcystis aeruginosa from mixed and field samples using MALDI-TOF MS. Environmental Monitoring and Assessment, 190, 712

Suzuki S., Yamaguchi H., Hiraoka M., Kawachi M. (2018) Mitochondrial and chloroplast genome sequences of Ulva ohno, a green-tide-forming macroalga in the Southern coastal regions of Japan. Mitochondrial DNA Part B, 3, 765-767

Suzuki K., Yoshida K., Watanabe H., Yamamoto H. (2018) Mapping the resilience of chemosynthetic communities in hydrothermal vent fields. Scientific Reports, 8, 9364

Suzuki S., Yamaguchi H., Nakajima N., Kawachi M. (2018) Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales. Scientific Reports, 8, 8058

Tanabe Y., Yamaguchi H. (2018) Evolutionary history of phycoerythrin pigmentation in the water bloom-forming cyanobacterium Microcystis aeruginosa. bioRxiv, 485508

Tanabe Y., Yamaguchi H., Watanabe M.M. (2018) Draft Genome Sequence of "Candidatus Phycosocius bacilliformis," an Alphaproteobacterial Ectosymbiont of the Hydrocarbon-Producing Green Alga Botryococcus braunii. Genome Announcements, 6, e00396-18

Thomas A.L., Maekawa F., Kawashima T., Sakamoto H., Sakamoto T., Davis P., Dores R.M. (2018) Analyzing the effects of co-expression of chick (Gallus gallus) melanocortin receptors with either chick MRAP1 or MRAP2 in CHO cells on sensitivity to ACTH(1-24) or ACTH(1-13)NH₂: Implications for the avian HPA axis and avian melanocortin circuits in the hypothalamus. General and Comparative Endocrinology, 256, 50-56

Thomas A.L., Maekawa F., Kawashima T., Sakamoto H., Sakamoto T., Davis P., Dores R.M. (2018) Analyzing the effects of co-expression of chick (Gallus gallus) melanocortin receptors with either chick MRAP1 or MRAP2 in CHO cells on sensitivity to ACTH(1-24) or ACTH(1-13)NH₂: Implications for the avian HPA axis and avian melanocortin circuits in the hypothalamus. General and Comparative Endocrinology, 256, 50-56

Wang W., Tada M., Nakajima D., Sakai M., Yoneda M., Sone H. (2018) Multiparameter Phenotypic Profiling in MCF-7 Cells for Assessing the Toxicity and Estrogenic Activity of Whole Environmental Water. Environmental Science ＆ Technology, 52, 9277-9284

Weisler M.I., Qua H., Zhao J.X., Nguyen A.D., Nothdurft L., Yamano H., Mihaljević M. (2018) Marine reservoir correction for the southern Marshall Islands for the past 2,500 years. Radiocarbon, 60, 333-348

Yamada K., Katsura H., Noel M-H., Ichinomiya M., Kuwata A., Sato S., Yoshikawa S. (2018) Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles). Journal of Phycology, 55, 196-203

Yamada K., Miyazaki K., Tomiyama T., Kanaya G., Miyama Y., Yoshinaga T., Wakui K., Tamaoki M., Toba M. (2018) Impact of sea spider parasitism on host clams: susceptibility and intensity-dependent mortality. Journal of the Marine Biological Association of the United Kingdom, 98, 735-742

Yamagishi T., Fuchida S., Katsumata M., Horie Y., Mori F., Kawachi M., Koshikawa H., Nozaki T., Kumagai H., Ishibasi J., Tatarazako N. (2018) Evaluation of the toxicity of leaches from hydrothermal sulfide deposits by means of a delayed fluorescence-based bioassay with the marine cyanobacterium Cyanobium sp. NIES-981. Ecotoxycology, 27, 1303-1309

Yamaguchi H., Suzuki S., Kawachi M. (2018) Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa. Journal of Genomics, 6, 30-33

Yamaguchi H., Suzuki S., Kawachi M. (2018) Draft Genome Sequence of Microcystis aeruginosa NIES-87, a Bloom-Forming Cyanobacterium from Lake Kasumigaura, Japan. Genome Announcements, 6, e01596-17

Yamaguchi H., Suzuki S., Kawachi M. (2018) Improved draft genome sequence of Microcystis aeruginosa NIES-298, a microcystin-producing cyanobacterium from Lake Kasumigaura, Japan. Genome Announcements, 6, e01551-17

Yoshikawa T., Higuchi H. (2018) Invasion of the loquat Eriobotrya japonica into urban areas of central Tokyo facilitated by crows. Ornithological Science, 17, 165-172

Zhang Y., Teng P., Aono M., Shimizu Y., Hosoi F., Omasa K. (2018) 3D monitoring for plant growth parameters in field with a single camera by multi-view approach. Journal of Agricultural Meteorology, 74, 129-139

• 2017

Adenyo C., Ogden B., Kayang B.B., Onuma M., Nakajima N., Inoue-Murayama M. (2017) Genome-wide DNA markers to support genetic management for domestication and commercial production in a large rodent, the Ghanaian grasscutter (Thryonomys swinderianus). Animal Genetics, 48, 113-115

Akasaka M., Kadoya T., Ishihama F., Fujita T., Fuller R.A. (2017) Smart protected area placement decelerates biodiversity loss: a representation-extinction feedback leads rare species to extinction. Conservation Letters, 10, 539-546

Akiyama T., Kohyama T.I., Nishida C., Onuma M., Momose K., Masuda R. (2017) Genetic variation of major histocompatibility complex genes in the endangered red-crowned crane. Immunogenetics, 69, 451-462

Akiyama T., Momose K., Onuma M., Matsumoto F., Masuda R. (2017) Low Genetic Variation of Red-Crowned Cranes on Hokkaido Island, Japan, Over the Hundred Years. Zoological Science, 34, 211-216

Akiyama T., Nishida C., Momose K., Onuma M., Takami K., Masuda R. (2017) Gene duplication and concerted evolution of mitochondrial DNA in crane species. Molecular Phylogenetics and Evolution, 106, 158-163

Ando H., Sasaki T., Horikoshi K., Suzuki H., Chiba H., Yamasaki M., Isagi Y. (2017) Wide-Ranging Movement and Foraging Strategy of the Critically Endangered Red-Headed Wood Pigeon (Columba janthina nitens): Findings from a Remote Uninhabited Island. Pacific Science, 71, 161-170

Andrefouet S., Payri C., Van Wynsberge S., Lauret O., Alefaio S., Preston G., Yamano H., Baudel S. (2017) The timing and the scale of the proliferation of Sargassum polycystum in Funafuti Atoll, Tuvalu. Journal of Applied Phycology, 29, 3097-3108

Arnaud C., Suzumura T., Inoue E., Adams M., Weiss A., Inoue-Murayama M. (2017) Genes, social transmission, but not maternal effects influence responses of wild Japanese macaques (Macaca fuscata) to novel-object and novel-food tests. Primates, 58, 103-113

Chan E.W.C., Baba S., Chan H.T., Kainuma M., Inoue T., Wong S.K. (2017) Ulam herbs: A review on the medicinal properties of Anacardium occidentale and Barringtonia racemose. Journal of Applied Pharmaceutical Science, 7, 241-247

Chan E.W.C., Tangah J., Inoue T., Kainuma M., Baba K., Oshiro N., Kezuka M., Kimura N. (2017) Botany, Uses, Chemistry and Pharmacology of Ficus microcarpa: A Short Review. Systematic Reviews in Pharmacy, 8, 103-111

Duvat V.K.E., Magnan A.K., Wise R.M., Hay J.E., Fazey I., Hinkel J., Stojavinoc T., Yamano H., Ballu V. (2017) Trajectories of exposure and vulnerability of small islands to climate change. WIREs Climate Change, 8, e478

Fuchida S., Yokoyama A., Fukuchi R., Ishibashi J., Kawagucci S., Kawachi M., Koshikawa H. (2017) Leaching of metals and metalloids from hydrothermal ore particulates and their effects on marine phytoplankton. ACS Omega, 2, 3175-3182

Fukasawa K., Mishima Y., Yoshioka A., Kumada N., Totsu K. (2017) Acoustic monitoring data of avian species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident. Ecological Research, 32, 769

Fukuda T., Tani T., Haraguchi S., Donai K., Nakajima N., Uenishi H., Eitsuka T., Miyagawa M., Song S., Onuma M., Hoshino Y., Sato E., Honda A. (2017) Expression of Six Proteins Causes Reprogramming of Porcine Fibroblasts Into Induced Pluripotent Stem Cells With Both Active X Chromosomes. Journal of Cellular Biochemistry, 118, 537-553

Fukushima M., Tomioka N., Jutagate T., Hiroki M., Murata M., Preecha C., Avakul P., Phomikong P., Imai A. (2017) The dynamics of pico-sized and bloom-forming cyanobacteria in large water bodies in the Mekong River Basin. PLoS ONE, 12, e0189609

Garcia-Molinos J., Takao S., Kumagai N.H., Fujii M., Burrows M.T., Poloczanska E.S., Yamano H. (2017) Improving the interpretability of climate landscape metrics: an ecological risk analysis of Japan's Marine Protected Areas. Global Change Biology, 23, 4440-4452

Hata A., Takada M.B., Nakashita R., Fukasawa K., Oshida T., Ishibashi Y., Sato Y. (2017) Stable isotope and DNA analyses reveal the spatial distribution of crop-foraging brown bears. Journal of Zoology, 303, 207-217

Hiono T., Okamatsu M., Matsuno K., Haga A., Iwata R., Nguyen L.T., Suzuki M., Kikutani Y., Kida H., Onuma M., Sakoda Y. (2017) Characterization of H5N6 highly pathogenic avian influenza viruses isolated from wild and captive birds in the winter season of 2016-2017 in Northern Japan. Microbiology and immunology, 61, 387-397

Inoue T., Kainuma M., Baba K., Oshiro N., Kimura N., Chan E.W.C. (2017) Garcinia subelliptica Merr. (Fukugi): A Multi-purpose Coastal Tree with Promising Medicinal Properties. Journal of Intercultural Ethnopharmacology, 6, 121-127

Ishii Y., Hayashi S., Takamura N. (2017) Radiocesium Transfer in Forest Insect Communities after the Fukushima Dai-ichi Nuclear Power Plant Accident. PLoS ONE, 12, e99709

Ito H., Ogden R., Langenhorst T., Inoue-Murayama M. (2017) Contrasting results from molecular and pedigree-based population diversity measures in captive zebra highlight challenges facing genetic management of zoo populations. Zoo Biology, 36, 87-94

Iwai N., Akasaka M., Kadoya T., Ishida S., Aoki T., Higuchi S., Takamura N. (2017) Examination of the link between life stages uncovered the mechanisms by which habitat characteristics affect odonates. Ecosphere, 8, e01930

Kataoka T., Yamaguchi H., Sato M., Watanabe T., Taniuchi Y., Kuwata A., Kawachi M. (2017) Seasonal and geographical distribution of near-surface small photosynthetic eukaryotes in the western North Pacific determined by pyrosequencing of 18S rDNA. FEMS Microbiology Ecology, 93, fiw229

Katayama M., Hirayama T., Kiyono T., Onuma M., Tani T., Takeda S., Nishimori K., Fukuda T. (2017) Immortalized prairie vole-derived fibroblasts (VMF-K4DTs) can be transformed into pluripotent stem cells and provide a useful tool with which to determine optimal reprogramming conditions. Journal of Reproduction and Development, 63, 311-318

Kimura N., Kainuma M., Inoue T., Chan E.W.C., Tangah J., Baba K., Oshiro N., Okamoto C. (2017) Botany, uses, chemistry and bioactivities of mangrove plants V: Acrostichum aureum and A. speciosum. ISME/GLOMIS, 15, 1-6

Kishi S., Goka K. (2017) Review of the invasive yellow-legged hornet, Vespa velutina nigrithorax (Hymenoptera: Vespidae), in Japan and its possible chemical control. Applied Entomology and Zoology, 52, 361-368

Kishi S., Sakura N., Yoshikawa T., Hiraiwa M., Katoh K. (2017) Interaction between insects and insect-pollinated plants on Miyake Island after a recent volcanic eruption: a comparison between vegetation types. Journal of Asia-Pacific Entomology, 20, 964-970

Kobayashi S., Satake, K. (2017) Difference in Body Size and Sexual Dimorphism in the Ogasawara Mitten Crab, Eriocheir ogasawaraensis, and the Japanese Mitten Crab, Eriocheir japonica. Pacific Science, 71, 171-188

Koide D., Yoshida K., Daehler C.C., Mueller-Dombois D. (2017) An upward elevation shift of native and non-native vascular plants over 40 years on the island of Hawai’i. Journal of Vegetation Science, 28, 939-950

Livingston G., Fukumori K., Provete B.D., Kawachi M., Takamura N., Leibold A.M. (2017) Predators regulate prey species sorting and spatial distribution in microbial landscapes. Journal of Animal Ecology, 86, 501-510

Lopes dos Santos A., Pollina T., Gourvil P., Corre E., Marie D., Garrido J.L., Rodriguez F., Noel M.H., Vaulot D., Eikrem W. (2017) Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Scientific Reports, 7, 14019

Makino W., Maruoka N., Nakagawa M., Takamura N. (2017) DNA barcoding of freshwater zooplankton in Lake Kasumigaura, Japan. Ecological Research, 32, 481-493

Makundi I., Koshida Y., Kuse K., Hiratsuka T., Ito J., Baba T., Watanabe S., Kawamura M., Odahara Y., Miyake A., Yamamoto H., Kuniyoshi S., Onuma M., Nishigaki K. (2017) Epidemiologic survey of feline leukemia virus in domestic cats on Tsushima Island, Japan: Management strategy for Tsushima leopard cats. Journal of Veterinary Diagnostic Investigation, 29, 889-895

Mameno K., Kubo T., Suzuki M. (2017) Social challenges of spatial planning for outdoor cat management in Amami Oshima Island, Japan. Global Ecology and Conservation, 10, 184-193

Meguro H., Iwasa M.A., Goka K., Abe H. (2017) Molecular phylogenetic relationships of halacarid mites suggest the reevaluation of traditional subfamily classification. Acarologia, 57, 633-641

Mitani E., Nakayama F., Matsuwaki I., Ichi I., Kawabata A., Kawachi M., Kato M. (2017) Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microbial Resources and Systematics, 33, 19-29

Mizumoto H., Urabe H., Kanbe T., Fukushima M., Araki H. (2017) Establishing an environmental DNA method to detect and estimate the biomass of Sakhalin taimen, a critically endangered Asian salmonid. Limnology, 19, 219-227

Mizuta T., Takashi M., Torikai H., Watanabe T., Fukasawa K. (2017) Song-count surveys and population estimates reveal the recovery of the endangered Amami Thrush Zoothera dauma major, which is endemic to Amami-Oshima Island in south-western Japan. Bird Conservation International, 27, 470-482

Mori M., Tsunoda K., Aizawa S., Saito Y., Koike Y., Gonda T., Abe S., Suzuki K., Yuasa Y., Kuge T., Tanaka H., Arai H., Watanabe S., Nohara S., Minai Y., Okada Y., Nagao S. (2017) Fractionation of radiocesium in soil, sediments, and aquatic organisms in Lake Onuma of Mt. Akagi, Gunma Prefecture using sequential extraction. Science of the Total Environment, 575, 1247-1254

Nomura T., Sakaguchi A., Steier P., Eigl R., Yamakawa A., Watanabe T., Sasaki K., Watanabe T., Golser R., Takahashi Y., Yamano H. (2017) Reconstruction of temporal distribution of ²³⁶U/²³⁸U in the Northwest Pacific Ocean using a coral core from the Kuroshio Current area. Marine Chemistry, 190, 28-34

Nozaki H., Mahakham W., Yamamoto K., Takusagawa M., Misumi O., Herron D.M., Rosenzweig F., Kawachi M. (2017) Rediscovery of the “ancestral Volvox” species: Morphology and phylogenetic position of Pleodorina sphaerica (Volvocales, Chlorophyceae) from Thailand. Phycologia, 56, 469-475

Numajiri Y., Kondo N.I., Toquenaga Y. (2017) Melanic mutation causes a fitness decline in bean beetles infected by Wolbachia. Entomologia Experimentalis et Applicata, 164, 54-65

Nunome M., Nakano M., Tadano R., Kawahara M.R., Kono T., Takahashi S., Kawashima T., Fujiwara A., Nirasawa K., Mizutani M., Matsuda Y. (2017) Genetic Divergence in Domestic Japanese Quail Inferred from Mitochondrial DNA D-Loop and Microsatellite Markers. PLoS ONE, 12, e0169978

Ohbayashi K., Hodoki Y., Kondo N., Kunii H., Shimada M. (2017) A massive tsunami promoted gene flow and increased genetic diversity in a near threatened plant species. Scientific Reports, 7, 10933

Okamatsu M., Ozawa M., Soda K., Takakuwa H., Haga A., Hiono T., Matsuu A., Uchida Y., Iwata R., Matsuno K., Kuwahara M., Yabuta T., Usui T., Ito H., Onuma M., Sakoda Y., Saito T., Otsuki K., Ito T., Kida H. (2017) Characterization of Highly Pathogenic Avian Influenza Virus A(H5N6), Japan, November 2016. Emerging Infectious Diseases, 23, 691-695

Onuma M., Kakogawa M., Yanagisawa M., Haga A., Okano T., Neagari Y., Okano T., Goka K., Asakawa M. (2017) Characterizing the temporal patterns of avian influenza virus introduction into Japan by migratory birds. Journal of Veterinary Medical Science, 79, 943-951

Saji S., Bathula S., Kubo A., Tamaoki M., Aono M., Sano T., Tobe K., Timm S., Bauwe H., Nakajima N., Saji H. (2017) Ozone-sensitive Arabidopsis mutants with deficiencies in photorespiratory enzymes. Plant Cell Physiol., 58, 914-924

Sakamoto Y., Kumagai N.H., Goka K. (2017) Declaration of local chemical eradication of the Argentine ant: Bayesian estimation with a multinomial-mixture model. Scientific Reports, 7, 3389

Sakamoto Y., Maeda T., Yoshiyama M., Pettis J.S. (2017) Differential susceptibility to the tracheal mite Acarapis woodi between Apis cerana and Apis mellifera. Apidologie, 48, 150-158

Sakamoto Y., Yago M. (2017) Potential for interspecific hybridization between Zizina emelina and Zizina otis (Lepidoptera: Lycaenidae). Journal of Insect Conservation, 21, 509-515

Sakurai T., Kobayashi J., Ito N., Serizawa S., Shiraishi H., Yabe T., Ishii Y., Suzuki N. (2017) Respiratory Uptake and Depuration Kinetics of Perfluorooctanesulfonate (PFOS) in a Marine Sandworm Species. Bulletin of Environmental Contamination and Toxicology , 99, 203-207

Santos A.L., Pollina T., Gourvil P., Corre E., Marie D., Garrido J.L., Rodguez F., Noel M.H., Vaulot D., Eikrem W. (2017) Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Scientific Reports, 7, 14019

Sekizawa A., Uechi H., Iguchi A., Nakamura T., Kumagai N.H., Suzuki A., Sakai K., Nojiri Y. (2017) Intraspecific variations in responses to ocean acidification in two branching coral species. Marine Pollution Bulletin, 122, 282-287

Senzaki M., Yamaura Y., Shoji Y., Kubo T., Nakamura F. (2017) Citizens promote the conservation of flagship species more than ecosystem services in wetland restoration. Biological Conservation, 214, 1-5

Shimazaki A., Yamaura Y., Senzaki M., Yabuhara Y., Nakamura F. (2017) Mobbing call experiment suggests the enhancement of forest bird movement by tree cover in urban landscapes across seasons. Avian Conservation and Ecology, 12, 16

Shimura Y., Hirose Y. , Misawa N., Wakazuki S., Fujisawa T., Nakamura Y., Kanesaki Y., Yamaguchi H., Kawachi M. (2017) Complete genome sequence of a coastal cyanobacterium, Synechococcus sp. strain NIES-970. Genome Announcements, 5, e00139-17

Shinohara R., Hiroki M., Kohzu A., Imai A., Inoue T., Furusato E., Komatsu K., Satou T., Tomioka N., Shimotori K., Miura S. (2017) Role of organic phosphorus in sediment in a shallow eutrophic lake. Water Resour. Res., 53, 7175-7189

Soga M., Gaston K.J., Kubo T. (2018) Cross-generational decline in childhood experiences of neighborhood flowering plants in Japan. Landscape and Urban Planning, 174, 55-62

Suetsugu K., Naiki A., Takeuchi Y., Toyama H., Tagane S., Yahara T. (2017) New Distributional Records of the Mycoheterotrophic Sciaphila alba (Triuridaceae), outside the Type Locality. Acta Phytotaxonomica et Geobotanica, 68, 123-126

Suzuki K., Yamauchi Y., Yoshida T. (2017) Interplay between microbial trait dynamics and population dynamics revealed by the combination of laboratory experiment and computational approaches. Journal of Theoretical Biology, 419, 201-210

Suzuki K., Yoshida K., Nakanishi Y., Fukuda S. (2017) An equation-free method reveals the ecological interaction networks within complex microbial ecosystems. Methods in Ecology and Evolution, 8, 1774-1785

Takamura N., Nakagawa M., Hanazato T. (2017) Zooplankton abundance in the pelagic region of Lake Kasumigaura (Japan): Monthly data since 1980. Ecological Research, 32, 1

Takeuchi Y., Soda R., Diway B., Kuda T., Nakagawa M., Nagamasu H., Nakashizuka T. (2017) Biodiversity conservation values of fragmented communally reserved forests, managed by indigenous people, in a human-modified landscape in Borneo. PLoS ONE, 12, e0187273

Ushio M., Aiba S.I., Takeuchi Y., Iida Y., Matsuoka S., Repin R., Kitayama K. (2017) Plant-soil feedbacks and the dominance of conifers in a tropical montane forest in Borneo. Ecological Monographs, 87, 105-129

Usio N., Nakagawa M., Aoki T., Higuchi S., Kadono Y., Akasaka M., Takamura N. (2017) Effects of land use on trophic states and multi-taxonomic diversity in Japanese farm ponds. Agricultural Ecosystems & Environment, 247, 205-215

Wu X.Z., Wu X., Inoue T. (2017) Real-time in-situ Simultaneous Monitoring of Dissolved Oxygen and Materials Movements at a Vicinity of Micrometers from an Aquatic Plant by Combining Deflection of a Probe Beam and Fluorescence Quenching. Analytical Sciences, 33, 351-355

Yamagishi T., Yamaguchi H., Suzuki S., Horie Y., Tatarazako N. (2017) Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP. PLoS ONE, 12, e0171259

Yamada K., Miyazaki K., Tomiyama T., Kanaya G., Miyama Y., Yoshinaga T., Wakui K., Tamaoki M., Toba M. (2017) Impact of sea spider parasitism on host clams: susceptibility and intensity-dependent mortality. J. Mar. Biol. Assoc. UK., 98, 735-742

Yamano H., Kayanne H., Yamaguchi T., Inoue T., Mochida Y., Baba S. (2017) Revisiting late Holocene sea-level change from the Gilbert Islands, Kiribati, west-central Pacific Ocean. Quaternary Research, 88, 400-408

Yasuda M., Sakamoto Y., Goka K., Nagamitsu T., Taki H. (2017) Insecticide susceptibility in Asian honey bees (Apis cerana) and implications for wild honey bees in Asia. Journal of Economic Entomology, 110, 447-452

Yoshioka A., Fukasawa K., Mishima Y., Sasaki K., Kadoya T. (2017) Ecological dissimilarity among land-use/land-cover types improves a heterogeneity index for predicting biodiversity in agricultural landscapes. Ambio, 46, 894-906

Yuliana T., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S. (2017) Draft genome sequence of Roseovarius sp. A-2, an iodide-oxidizing bacterium isolated from natural gas brine water, Chiba, Japan. Journal of Genomics, 5, 51-53

Wilson V., Weiss A., Humle T., Morimura N., Udono T., Idani G., Matsuzawa T., Hirata S., Inoue-Murayama M. (2017) Chimpanzee Personality and the Arginine Vasopressin Receptor 1A Genotype. Behavior Genetics, 47, 215-226

• 2016

Ando H., Suzuki S., Horikoshi K., Suzuki H., Umehara S., Yamasaki M., Hanya G., Inoue-Murayama M., Isagi Y. (2016) Seasonal and inter-island variation in the foraging strategy of the critically endangered Red-headed Wood Pigeon Columba janthina nitens in disturbed island habitats derived from high-throughput sequencing. IBIS, 158, 291-304

Baba S., Chan H.T., Kezuka M., Inoue T., Chan E.W.C. (2016) Artocarpus altilis and Pandanus tectorius: Two important fruits of Oceania with medicinal values. Journal of Food and Agriculture, 28, 531-539

Baba S., Chan H.T., Oshiro N., Maxwell G.S., Inoue T., Chan E.W.C. (2016) Botany, uses, chemistry and bioactivities of mangrove plants IV: Avicennia marina. ISME/GLOMIS, 14, 5-10

Baba S., Chan H.T., Oshiro N., Maxwell G.S., Inoue T., Chan E.W.C. (2016) Botany, uses, chemistry and bioactivities of mangrove plants IV: Avicennia marina. ISME/GLOMIS, 14, 5-10

Fukasawa K., Mishima Y., Yoshioka A., Kumada N., Totsu K., Osawa T. (2016) Mammal assemblages recorded by camera traps inside and outside the evacuation zone of the Fukushima Daiichi Nuclear Power Plant accident. Ecological Research, 31, 493

Fukuda T., Iino Y., Eitsuka T., Onuma M., Katayama M., Murata K., Murayama M., Hara K., Isogai E., Kiyono T. (2016) Cellular conservation of endangered midget buffalo (Lowland Anoa, Bubalus quarlesi) by establishment of primary cultured cell, and its immortalization with expression of cell cycle regulators. Cytotechnology, 68, 1937-1947

Fukuda T., Iino Y., Onuma M., Gen B., Inoue-Murayama M., Kiyono T. (2016) Expression of human cell cycle regulators in the primary cell line of the African savannah elephant (loxodonta africana) increases proliferation until senescence, but does not induce immortalization. In Vitro Cellular & Developmental Biology - Animal, 52, 20-26

Fukumori K., Yoshizaki E., Takamura N., Kadoya T. (2016) Detritivore diversity promotes a relative contribution rate of detritus to the diet of predators in ponds. Ecosphere, 7, e01211

Garcia Molinos J., Halpern B.S., Schoeman D.S., Brown C.J., Kiessling W., Moore P.J., Pandolfi J.M., Poloczanska E.S., Richardson A.J., Burrows M.T. (2016) Climate velocity and the future global redistribution of marine biodiversity. Nature Climate Change, 6, 83-88

Hamao S., Sugita N., Nishiumi I. (2016) Geographic variation in bird songs: examination of the effects of sympatric related species on the acoustic structure of songs. Acta Ethologica, 19, 81-90

Hirose Y., Fujisawa T., Ohtsubo Y., Katayama M., Misawa N., Wakazuki S., Shimura Y., Nakamura Y., Kawachi M., Yoshikawa H. , Eki T., Kanesaki Y. (2016) Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. Journal of Biotechnology, 218, 51-52

Hirose Y., Fujisawa T., Ohtsubo Y., Katayama M., Misawa N., Wakazuki S., Shimura Y., Nakamura Y., Kawachi M., Yoshikawa H., Eki T., Kanesaki Y. (2016) Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools. Journal of Biotechnology, 220, 45-46

Hirose Y., Fujisawa T., Ohtsubo Y., Katayama M., Misawa N., Wakazuki S., Shimura Y., Nakamura Y., Kawachi M., Yoshikawa H., Eki T., Kanesaki Y. (2016) Complete Genome Sequence of Cyanobacterium Leptolyngbya sp. NIES-3755. Genome Announcements, 4, e00090-16

Ishiguro S., Yamano H., Oguma H. (2016) Evaluation of DSMs generated from multi-temporal aerial photographs using emerging Structure from Motion-Multi-View Stereo technology. Geomorphology, 268, 64-71

Ito K., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S. (2016) Draft genome sequence of Arenibacter sp. strain C-21, an iodine-accumulating bacterium isolated from surface marine sediment. Genome Announcements, 4, e1155-16

Kadekaru S., Tamukai K., Tominaga A., Goka K., Une Y. (2016) Spontaneous oral chytridiomycosis in wild bullfrog tadpoles in Japan. The Journal of Veterinary Medical Science, 78, 573-577

Kasai A., Hayashi T.I., Ohnishi H., Suzuki K., Hayasaka D., Goka K. (2016) Fipronil application on rice paddy fields reduces densities of common skimmer and scarlet skimmer. Scientific Reports, 6, 23055

Kawachi M., Kataoka T., Sato M., Noel Kawachi M., Kuwata A., Demura M., Yamaguchi H. (2016) Application of cryopreservation to genetic analyses of a photosynthetic picoeukaryote community. Gene, 576, 708-716

Kawashima T., Ahmed W., Nagino K., Ubuka T., Tsutui K. (2016) Avian Test Battery for the Evaluation of Developmental Abnormalities of Neuro- and Reproductive Systems. Frontiers in Neuroscience, 10, 296

Kayanne H., Aoki K., Suzuki T., Hongo C., Yamano H., Ide Y., Iwatsuka Y., Takahashi K., Katayama H., Sekimoto T., Isobe M. (2016) Eco-geomorphic processes that maintain a small coral reef island: Ballast Island in the Ryukyu Islands, Japan. Geomorphology, 271, 84-93

Kitanishi S., Hayakawa A., Takamura K., Nakajima J., Kawaguchi Y., Onikura N., Mukai T. (2016) Phylogeography of Opsariichthys platypus in Japan based on mitochondrial DNA sequences. Ichthyological Research, 63, 506-518

Komatsu H., Wada K., Kanjoh T., Miyashita H., Sato M., Kawachi M., Kobayashi M. (2016) Unique chlorophylls in picoplankton Prochlorococcus sp.“Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086”. Photosynthesis Research, 130, 445-467

Kondo N.I., Ueno R., Ohbayashi K., Golygina V.V., Takamura K. (2016) DNA barcoding supports reclassification of Japanese Chironomus species (Diptera: Chironomidae). Entomological Science, 19, 337-350

Kubo T., Shoji Y. (2016) Demand for bear viewing hikes: implications for balancing visitor satisfaction with safety in protected areas. Journal of Outdoor Recreation and Tourism, 16, 44-49

Kubo T., Shoji Y. (2016) Public segmentation based on the risk perception of brown bear attacks and management preferences. European Journal of Wildlife Research, 62, 203-210

Kumagai N.H., Yamano H., Fujii M., Yamanaka Y. (2016) Habitat-forming seaweeds in Japan (fucoids and temperate kelps). Ecological Research (Data Paper), 31, 759

Li R., Luo T., Molg T., Zhao J., Cui X., Li X., Cui X., Du M., Tang Y. (2016) Leaf unfolding of Tibetan alpine meadows captures the arrival of monsoon rainfall. Scientific Reports, 6, 20985

Maeda T., Sakamoto Y. (2016) Field application of menthol for Japanese honey bees, Apis cerana japonica (Hymenoptera: Apidae), to control tracheal mites, Acarapis woodi (Acari: Tarsonemidae). Experimental and Applied Acarology, 70, 299-308

Maeda T., Sakamoto Y. (2016) Tracheal mites, Acarapis woodi, greatly increase overwinter mortality in colonies of the Japanese honeybee, Apis cerana japonica. Apidologie, 47, 762-770

Matsuzaki S.S., Kumagai N.H., Hayashi T.I. (2016) Need for Systematic Statistical Tools for Decision-Making in Radioactively Contaminated Areas. Environ. Sci. Technol., 50, 1075-1076

Matsuzaki S.S., Sasaki T., Akasaka M. (2016) Invasion of exotic piscivores causes losses of functional diversity and functionally unique species in Japanese lakes. Freshwater Biology, 61, 1128-1142

Mitsuguchi T., Hirota M., Paleo Labo AMS Dating Group, Yamazaki A., Watanabe T., Yamano H. (2016) Post-bomb coral Δ¹⁴C record from Iki Island, Japan: possible evidence of oceanographic conditions on the northern East China Sea shelf. Geo-Marine Letters, 36, 371-377

Moe Y., Tanaka T., Morishita M., Ohta R., Nakahara C., Kawashima T., Maekawa F., Sakata I., Sakai T., Tsukahara S. (2016) A comparative study of sex difference in calbindin neurons among mice, musk shrews, and Japanese quails. Neuroscience Letters, 631, 63-69

Moriguchi S., Onuma M., Goka K. (2016) Spatial assessment of the potential risk of avian influenza A virus infection in three raptor species in Japan. The Journal of Veterinary Medical Science, 78, 1107-1115

Mitsuguchi T., Hirota M., Paleo Labo AMS Dating Group, Yamazaki A., Watanabe T., Yamano H. (2016) Post-bomb coral Δ14C record from Iki Island, Japan: possible evidence of oceanographic conditions on the northern East China Sea shelf. Geo-Marine Letters, 36, 371-377

Nagatoshi Y., Mitsuda N., Hayashi M., Inoue S., Okuma E., Kubo A., Murata Y., Seo M., Saji H., Kinoshita T., Ohme-Takagi M. (2016) GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement. PNAS, 113, 4218-4223

Nakajima Y., Fukuda H., Onuma M., Murata K., Ueda M., Sugai E., Shiraishi T., Tajima A. (2016) Migratory ability of gonadal germ cells (GGCs) isolated from Ciconia boyciana and Geronticus eremita embryos into the gonad of developing chicken embryos. The Journal of Veterinary Medical Science, 78, 1055-1058

Nakamura M., Higa Y., Kumagai N.H., Okaji K. (2016) Using long-term removal data to manage a Crown-of-Thorns Starfish population. Diversity, 8, 24

Nishijima S., Furukawa T., Kadoya T., Ishihama F., Kastner T., Matsuda H., Kaneko N. (2016) Evaluating the impacts of wood production and trade on bird extinction risks. Ecological Indicators, 71, 368-376

Nishikawa U., Azuma N., Larson E.R., Abbott C.L., Olden J.D., Akanuma H., Takamura K., Takamura N. (2016) Phylogeographic insights into the invasion history and secondary spread of the signal crayfish in Japan. Ecology and Evolution, 6, 5366-5382

Nishizawa T., Nakajima N., Tamaoki M., Aono M., Kubo A., Saji H. (2016) Fixed-route monitoring and a comparative study of the occurrence of herbicide-resistant oilseed rape (Brassica napus L.) along a Japanese roadside. GM Crops Food, 7, 20-37

Okada H., Niwa S., Hiroki M. (2016) Nematode fauna of paddy field flooded all year round. Nematological Research, 46, 65-70

Okano T., Ishiniwa H., Onuma M., Shindo J., Yokohata Y., Tamaoki M. (2016) Effects of environmental radiation on testes and spermatogenesis in wild large Japanese field mice (Apodemus speciosus) from Fukushima. Scientific Reports, 6, 23601

Sakai M., Kita Y.F., Kogi K., Shinohara M., Morisaka T., Shiina T., Inoue-Murayama M. (2016) A wild Indo-Pacific bottlenose dolphin adopts a socially and genetically distant neonate. Scientific Reports, 6, 23902

Sakaguchi A., Nomura T., Steier P., Gloser R., Sasaki K., Watanabe T., Nakakuki T., Takahashi Y., Yamano H. (2016) Temporal and vertical distributions of anthropogenic ²³⁶U in the Japan Sea using a coral core and seawater samples. J. Geophys. Res. Oceans, 121, 4-13

Sakamoto Y., Mori H., Ohnishi H., Imai H., Kishimoto T., Toda M., Kishi S., Goka K. (2016) Surveys of the ant faunas at ports of Tokyo Bay and the Ogasawara Islands. Applied Entomology and Zoology, 51, 661-667

Sanchez-bayo F., Goulson D., Pennacchio F., Nazzi F., Goka K., Desneux N. (2016) Are bee diseases linked to pesticides? - A brief review. Environment International, 89-90, 7-11

Sano K., Isobe T., Yang J., Tin-Tin-Win-Shwe, Yoshikane M., Nakayama S., Kawashima T., Suzuki G., Hashimoto S., Nohara K., Tohyama C., Maekawa F. (2016) In utero and Lactational Exposure to Acetamiprid Induces Abnormalities in Socio-Sexual and Anxiety-Related Behaviors of Male Mice. Frontiers in Neuroscience, 10, 228

Sasano M., Imasato M., Yamano H., Oguma H. (2016) Development of a regional coral observation by a fluorescence imaging LIDAR installed in a towable buoy. Remote Sensing, 8, 48

Sawada H., Tsukahara K., Kohno Y., Suzuki K., Nagasawa N., Tamaoki M. (2016) Elevated Ozone Deteriorates Grain Quality of Japonica Rice cv. Koshihikari, Even if it Does Not Cause Yield Reduction. Rice, 9, 7

Sugita N., Kawakami K., Nishiumi I. (2016) Origin of Japanese white-eyes and brown-eared bulbuls on the Volcano islands. Zoological Science, 33, 146-153

Sun L.W., Jiang W.J., Sato H., Kawachi M., Lu X.W. (2016) Rapid Classification and Identification of Microcystis aeruginosa Strains Using MALDI-TOF MS and Polygenetic Analysis. PLoS ONE, 11, e0156275

Takagi S., Toki W., Yoshioka A. (2016) Invasion of the redback spider Latrodectus hasseltii (Araneae:Theridiidae) into human-modified sand dune ecosystems in Japan. Applied Entomology and Zoology, 51, 43-51

Takamura N., Nakagawa M. (2016) Photosynthesis and primary production in Lake Kasumigaura (Japan) monitored monthly since 1981. Ecological Research, 31, 287

Takano K., Nakagawa K., Aiba M., Oguro M., Morimoto J., Furukawa Y., Mishima Y., Ogawa K., Ito R., Takemi T. (2016) Projection of impacts of climate change on windthrows and evaluation of potential adaptation measures in forest management: A case study from empirical modelling of windthrows in Hokkaido, Japan, by Typhoon Songda (2004). Hydrological Research Letters, 10, 132-138

Tamaoki M. (2016) Studies on radiation effects from the Fukushima nuclear accident on wild organisms and ecosystems. Global Environ. Res., 20, 73-82

Tamaoki M., Yabe T., Furukawa J., Watanabe M., Ikeda K., Yasutani Y., Nishizawa T. (2016) Comparison of Potentials of Higher Plants for Phytoremediation of Radioactive Cesium from Contaminated Soil. Environmental Control in Biology, 54, 65-69

Terashima I., Tang Y., Muraoka H. (2016) Spatio-temporal variations in photosynthesis. Journal of Plant Research, 129, 295-298

Tomimatsu H., Tang Y. (2016) Effects of high CO₂ levels on dynamic photosynthesis: carbon gain, mechanisms, and environmental interactions. Journal of Plant Research, 129, 365-377

Tomiyama T., Yamada K., Wakui K., Tamaoki M., Miyazaki K. (2016) Impact of sea spider parasitism on host clams: relationships between burial patterns and parasite loads, somatic condition and survival of host. Hydrobiologia, 770, 15-26

Tsuboi S., Yamamura S., Imai A., Iwasaki K. (2016) Unexpected diversity of pepA genes encoding leucine aminopeptidases in sediments from a freshwater lake. Microbes and Environments, 31, 49-55

Usio N., Azuma N., Larson E.R., Abbott C.L., Olden J.D., Akanuma H., Takamura K., Takamura N. (2016) Phylogeographic insights into the invasion history and secondary spread of the signal crayfish in Japan. Ecology and Evolution, 6, 5366-5382

Wang C., Tang Y., Chen J. (2016) Plant phenological synchrony increases under rapid within-spring warming. Scientific Reports, 6, 25460

Watanabe K., Kohzu A., Suda W., Yamamura S., Takamatsu T., Takenaka A., Koshikawa K.M., Hayashi S., Watanabe M. (2016) Microbial nitrification in throughfall of a Japanese cedar associated with archaea from the tree canopy. SpringerPlus, 5, 1596

Yamagata Y., Yoda H., Osaki K., Amano Y., Aono M., Seo S., Kuchitsu K., Mitsuhara I. (2016) Mitogen-activated protein kinase 4-like carrying an MEY motif instead of a TXY motif is involved in ozone tolerance and regulation of stomatal closure in tobacco. Journal of Experimental Botany, 67, 3471-3479

Yamagishi T., Katsumata M., Yamaguchi H., Shimura Y., Kawachi M., Koshikawa H., Horie Y., Tatarazako N. (2016) Rapid ecotoxicological bioassay using delayed fluorescence in the marine cyanobacterium Cyanobium sp.(NIES-981). Ecotoxicology, 25, 1751-1758

Yamaguchi H., Shimura Y., Suzuki S., Yamagishi T., Tatarazako N., Kawachi M. (2016) Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. Genome Announcements, 4, e00736-16

Yamaguchi H., Suzuki S., Sano T., Tanabe Y., Nakajima N., Kawachi M. (2016) Draft genome sequence of Microcystis aeruginosa NIES-98, a non-microcystin-producing cyanobacterium from Lake Kasumigaura, Japan. Genome Announcements, 4, e01187-16

Yamamoto M., Handa S., Kawachi M., Miyamura S., Nagumo T., Hirata A., Kawano S. (2016) Mother Cell Wall Cleavage during Filament Formation in Stichococcus bacillaris (Trebouxiophyceae, Chlorophyta). Cytologia, 81, 35-39

Yamaura Y., Connor E.F., Royle J.A., Itoh K., Sato K., Taki H., Mishima Y. (2016) Estimating species-area relationships by modeling abundance and frequency subject to incomplete sampling. Ecology and Evolution, 6, 4836-4848

Yamazaki A., Watanabe T., Tsunogai U., Iwase F., Yamano H. (2016) A 150-year variation of the Kuroshio transport inferred from coral nitrogen isotope signature. Paleoceanography, 31, 838-846

Yasutaka T., Miyazu S., Tsuji H., Arita K., Hayashi S., Takahashi A., Kawamoto T., Aoyama M. (2016) Development of a copper-substituted, Prussian blue-impregnated, nonwoven cartridge filter to rapidly measure radiocesium concentration in seawater. Journal of Nuclear Science and Technology, 53, 1243-1250

• 2015

Andrefouet S., Aucan J., Jourdan H., Kench P., Menkes C., Vidal E., Yamano H. (2015) Conservation of low-islands: high priority despite sea-level rise. A comment on Courchamp et al. Trends in Ecology and Evolution, 30, 1-2

Cao R., Chen J., Shen M., Tang Y. (2015) An improved logistic method for detecting spring vegetation phenology in grasslands from MODIS EVI time-series data. Agricultural and Forest Meteorology, 200, 9-20

Fukumori K., Livingston G., Leibold M.A. (2015) Disturbance-mediated colonization-extinction dynamics in experimental protist metacommunities. Ecology, 96, 3234-3242

Furukawa T., Kayo C., Kadoya T., Kastner T., Hondo T., Matsuda H., Kaneko N. (2015) Forest Harvest Index: accounting for global gross forest cover loss of wood production and an application of trade analysis. Global Ecology and Conservation, 4, 150-159

Hamblet M., Hongo C., Sugihara K. (2015) An identification guide to some major Quaternary fossil reef-building coral genera (Acropora, Isopora, Montipora, and Porites). Island Arc, 24, 16-30

Hayasaka D., Kuwayama N., Takeo A., Ishida T., Mano H., Inoue M.N., Nagai T., Sanchez-Bayo F., Goka K., Sawahata T. (2015) Different acute toxicity of fipronil on invasive Linepithema humile supercolonies and some non-target ground arthropods. Ecotoxicology, 24, 1221-1228

Imai H., Noda Y., Tamaoki M. (2015) Alteration of Arabidopsis SLAC1 promoter and its association with natural variation in water loss resistance. Plant Signal Behav., 10, e989761

Inoue M.N., Ito F., Goka K. (2015) Queen execution increases relatedness among workers of the invasive Argentine ant, Linepithema humile. Ecology and Evolution, 5, 4098-4107

Inoue M.N., Saito Morooka F., Suzuki K. Nomura T., Hayasaka D., Kishimoto T., Sugimaru K., Sugiyama T., Goka K. (2015) Ecological impacts on native ant and ground-dwelling animal communities through Argentine ant (Linepithema humile) (Hymenoptera: Formicidae) management in Japan. Appl Entomol Zool, 50 331-339

Inoue Y., Komori C., Kobayashi T., Kondo N., Ueno R., Takamura K. (2015) Nanocladius (Plecopteracoluthus) shigaensis sp. nov. (Chironomidae: Orthocladiinae) whose larvae are phoretic on nymphs of stoneflies (Plecoptera) from Japan. Zootaxa, 3931, 551-567

Kadoya T., Inoue T. (2015) Spatio-temporal pattern of specific gravity of mangrove diaspore: implications for upstream dispersal. Ecography, 38, 472-479

Kadoya T., McCann S.K. (2015) Weak Interactions and Instability Cascades. Scientific Reports, 5, 12652

Kainuma M., Kezuka M., Inoue T., Chan E.W.C., Tangah J., Baba S., Chan H.T. (2015) Botany, uses, chemistry and bioactivities of mangrove plants I: Rhizophora stylosa. ISME/GLOMIS Electronic Journal, 13, 12-17

Kameyama S., Miyamoto C., Suda K., Asano S., Nohara S., Nakamura K. (2015) Mangrove Wetland Restoration on Abundant Shrimp ponds using Remote Sensing and GIS in Vietnam. Environmental science, 28, 63-72

Kamikawa R., Tanifuj G., Kawachi M., Miyashita H. , Hashimoto T., Inagaki Y. (2015) Plastid Genome-Based Phylogeny Pinpointed the Origin of the Green-Colored Plastid in the Dinoflagellate Lepidodinium chlorophorum. Genome biology and evolution, 7, 1133-1140

Kidera N., Uyeno D., Naruse T. (2015) Notes on the occurrence and habitat of Hydrophis ornatus (Gray, 1842) (Reptilia: Squamata: Elapidae) in the Ryukyu Islands, Japan. Fauna Ryukyuana, 20, 7-13

Kohyama T.I., Akiyama T., Nishida C., Takami K., Onuma M., Momose K., Masuda R. (2015) Isolation and characterization of major histocompatibility complex class II B genes in cranes. Immunogenetics, 67, 705-710

Makino A., Klein C.J., Possingham H.P., Yamano H., Yara Y., Ariga T, Matsuhasi K., Beger M. (2015) The effect of applying alternate IPCC climate scenarios to marine reserve design for range changing species. Conservation Letters, 8, 320-328

Matsuyama R., Yabusaki T., Kuninaga N., Okano T., Suzuki M., Asano M. (2015) Coexistence of two different genotypes of Sarcoptes scabiei derived from companion dogs and wild raccoon dogs in Gifu, Japan: The genetic evidence for transmission between domestic and wild canids. Veterinary Parasitology, 212, 356-60

Matsuzaki S.S., Kadoya T. (2015) Trends and stability of inland fishery resources in Japanese lakes: introduction of exotic piscivores as a driver. Ecological Applications, 25, 1420-1432

Miyajima T., Hori M., Hamaguchi M., Shimabukuro H., Adachi H., Yamano H., Nakaoka M. (2015) Geographic variability in organic carbon stock and accumulation rate in sediments of East and Southeast Asian seagrass meadows. Global Biogeochemical Cycles, 29, 397-415

Miyazaki K., Tomiyama T., Yamada K., Tamaoki M. (2015) 18S analysis on the taxonomic position of an endoparasitic pycnogonid Nymphonella tapetis (Arthropoda, Pycnogonida) in the family Ascorhynchidae. Journal of Crustacean Biology, 35, 491-494

Moriguchi S., Inoue M.N., Kishimoto T., Kameyama T., Ito F., Goka K. (2015) Estimating colonization and invasion risk maps for Linepithema humile, in Japan. Journal of Asia-Pacific Entomology, 18, 343-350

Nakahara F., Ando H., Ito H., Murakami A., Morimoto N., Yamasaki M., Takayanagi A., Isagi Y. (2015) The applicability of DNA barcoding for dietary analysis of sika deer. DNA Barcodes, 3, 200-206

Nakamura M., Kumagai N.H., Sakai K., Okaji K., Ogasawara K., Mitarai S. (2015) Spatial variability in recruitment of acroporid corals and predatory starfish along the Onna coast, Okinawa, Japan. Marine Ecology Progress Series, 540, 1-12

Natsumeda T., Takamura N., Nakagawa M., Kadono Y., Tanaka T., Mitsuhashi H. (2015) Environmental and biotic characteristics to discriminate farm ponds with and without exotic largemouth bass and bluegill in western Japan. Limnology, 16, 139-148

Matsuyama R., Yabusaki T., Kuninaga N., Morimoto T., Okano T., Suzuki M., Asano M. (2015) Coexistence of two different genotypes of Sarcoptes scabiei derived from companion dogs and wild raccoon dogs in Gifu, Japan: The genetic evidence for transmission between domestic and wild canids. Veterinary Parasitology, 212, 356-360

Nozaki H., Matsuzaki R., Yamamoto K., Kawachi M, Takahashi F. (2015) Delineating a New Heterothallic Species of Volvox (Volvocaceae, Chlorophyceae) Using New Strains of Volvox africanus. PloS one, 10, e0142632

Nurdin N., Komatsu T., Yamano H., Arafat G., Rani C., Akber M.A.S. (2015) Spectral Clustering of Coral Reefs on the Small Islands, Spermonde Archipelago, Indonesia. Physical Science International Journal, 5, 1-11

Ohmura Y., Matsukura K., Abe J.P., Hosaka K., Tamaoki M., Dohi T., Kakishima M., Seaward M.R.D. (2015) ¹³⁷Cs concentrations in foliose lichens within Tsukuba-city as a reflection of radioactive fallout from the Fukushima Dai-ichi Nuclear Power Plant accident. Journal of Environmental Radioactivity, 141, 38-43

Okano T., Nakata K., Nakaya Y., Nagamine T., Onuma M. (2015) Reproductive traits of the Ryukyu long-furred rat (Diplothrix legata) on Okinawa-jima Island. Journal of Veterinary Medical Science, 77, 637-642

Okano T., Onuma M. (2015) Morphological variation in the sperm head of Ryukyu long-furred rat, Diplothrix legata. Mammal Study, 40, 193-196

Okano T., Onuma M., Ishiniwa H., Azuma N., Tamaoki M., Nakajima N., Shindo J., Yokohata Y. (2015) Classification of the spermatogenic cycle, seasonal changes of seminiferous tubule morphology, and estimation of the breeding season of the large Japanese field mouse (Apodemus speciosus) in Toyama and Aomori prefectures, Japan. Journal of Veterinary Medical Science, 77, 799-807

Onuma M. (2015) The Present Status of Available Genetic Information for Avian Species Distributing in Japan and on the List of NationallyEndangered Species of Wild Fauna and Flora. The Journal of Poultry Science, 52, 167-175

Osawa T., Kadoya T., Kohyama K. (2015) 5- and 10-km mesh datasets of agricultural land use based on governmental statistics for 1970-2005. Ecological Research, 30, 757-757

Phomikong P., Fukushima M., Sricharoendham B., Nohara S., Jutagate T. (2015) Diversity and community structure of fishes in the regulated versus unregulated tributaries of the Mekong River. River Research and Applications, 31, 1262-1275

Sakamoto Y., Hirai N., Ishii M. (2015) Effects of photoperiod and temperature on the development and diapause of the endangered butterfly Zizina emelina (Lepidoptera: Lycaenidae). Journal of Insect Conservation, 19, 639-645

Sakamoto Y., Hirai N., Tanikawa T., Yago M., Ishii M. (2015) Population genetic structure and Wolbachia infection in an endangered butterfly, Zizina emelina (Lepidoptera, Lycaenidae), in Japan. Bulletin of Entomological Research, 105, 152-165

Sarazin V., Duclercq J., Mendou B., Aubanelle L., Veyres N., Aono M., Pilard S., Guerineau F., Sangwan-Norreel B., Sangwan R.S. (2015) Arabidopsis BNT1, an atypical TIR-NBS-LRR gene, acting as a regulator of the hormonal response to stress. Plant Science, 239, 216-229

Senga Y., Hiroki M., Terui S., Nohara S. (2015) Variation in microbial function through soil depth profiles in the Kushiro Wetland, northeastern Hokkaido, Japan. Ecological Research, 30, 563-572

Shimura Y., Hirose Y., Misawa N., Osana Y., Katoh H., Yamaguchi H., Kawachi M. (2015) Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. DNA Research, 22, 403-412

Soga M., Yamaura Y., Aikoh T., Shoji Y., Kubo T., Gaston K.J. (2015) Reducing the extinction of experience: Association between urban form and recreational use of public greenspace. Landscape and Urban Planning, 143, 69-75

Su G., Xu J., Akasaka M., Molinos J.G., Matsuzaki S.S. (2015) Human impacts on functional and taxonomic homogenization of plateau fish assemblages in Yunnan, China. Global Ecology and Conservation, 4, 470-478

Suzuki K., Yoshida T. (2015) Ecological resilience of population cycles: A dynamic perspective of regime shift. Journal of theoretical biology, 370, 103-115

Takamura K., Nakahara M. (2015) Intraspecific invasion occurring in geographically isolated populations of the Japanese cyprinid fish Zacco platypus. Limnology, 16, 161-170

Takao S., Kumagai N.H., Yamano H., Fujii M., Yamanaka Y. (2015) Projecting the impacts of rising seawater temperatures on the distribution of seaweeds around Japan under multiple climate change scenarios. Ecology and Evolution, 5, 213-223

Takao S., Yamano H., Sugihara K., Kumagai N.H., Fujii M., Yamanaka Y. (2015) An improved estimation of the poleward expansion of coral habitats based on inter-annual variation of sea surface temperatures. Coral Reefs, 34, 1125-1137

Takeuchi Y., Chaffron S., Salcher M.M., Shimizu-Inatsugi R., Kobayashi M.J., Diway B., von Mering C., Pernthaler J., Shimizu K.K. (2015) Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes. Systematic and Applied Microbiology, 38, 330-339

Takeuchi Y., Innan H. (2015) Evaluating the performance of neutrality tests of a local community using a niche-structured simulation model. Oikos, 124, 1203-1214

Tani N., Tsumura Y., Fukasawa K., Kado T., Taguchi Y., Lee S.L., et al. (2015) Mixed Mating System Are Regulated by Fecundity in Shorea curtisii (Dipterocarpaceae) as Revealed by Comparison under Different Pollen Limited Conditions. PLoS ONE, 10, e0123445

Terui A., Miyazaki Y., Yoshioka A., Matsuzaki S.S. (2015) A cryptic Allee effect: spatial contexts mask an existing fitness-density relationship. Royal Society Open Science, 2, 150034

Tsukahara K., Sawada H., Kohno Y., Matsuura T., Mori I.C., Terao T., Ioki M., Tamaoki M. (2015) Ozone-induced rice grain yield loss is triggered via a change in panicle morphology that is controlled by ABERRANT PANICLE ORGANIZATION 1 gene. PLoS ONE, 10, e0123308

Tubay J.M., Suzuki K., Uehara T., Kakishima S., Ito H., Ishida A., Yoshida K., Mori S., Rabajante J.F., Morita S., Yokozawa M., Yoshimura J. (2015) Microhabitat locality allows multispecies coexistence in terrestrial plant communities. Scientific Reports, 5, 15376

Ueno R., Sateke K., Yamano H. (2015) New records of Chironomidae (Diptera) of Tuvalu. Ann. Limnol. - Int. J. Lim., 51, 71-78

Wang C., Cao R., Chen, Rao Y., Tang Y. (2014) Temperature sensitivity of spring vegetation phenology correlates to within-spring warming speed over the Northern Hemisphere. Ecological Indicators, 50, 62-68

Wu X.Z., Nie L., Inoue T. (2015) Comparative Studies on Effects of Acid Solutions on Aquatic Plants by Beam Deflection and Absorbance Spectroscopy Methods. Analytical Sciences, 31, 837-840

Xu J., Su G., Xiong Y., Akasaka M., Garcia Molinos J., Matsuzaki S.S., Zhang M. (2015) Complimentary analysis of metacommunity nestedness and diversity partitioning highlights the need for a holistic conservation strategy for highland lake fish assemblages. Global Ecology and Conservation, 3, 288-296

Yamaguchi H., Suzuki S., Tanabe Y., Osana Y., Shimura Y., Ishida K., Kawachi M. (2015) Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from Lake Kasumigaura, Japan. Genome Announcements, 3, e00551-15

Yamakita T., Yamamoto H., Nakaoka M., Yamano H., Fujikura K., Hidaka K., Hirota Y., Ichikawa T., Kakehi S., Kameda T., Kitajima S., Kogure K., Komatsu T., Kumagai N.H., Miyamoto H., Miyashita K., Morimoto H, Nakajima R., Nishida S., Nishiuchi K., Sakamoto S., Sano M., Sudo K., Sugisaki H., Tadokoro K., Tanaka K., Jintsu-Uchifune Y., Watanabe K., Watanabe H., Yara Y., Yotsukura N., Shirayama Y. (2015) Identification of important marine areas around the Japanese Archipelago: Establishment of a protocol for evaluating a broad area using ecologically and biologically significant areas selection criteria. Marine Policy, 51, 136-147

Yamano H., Cabioch G., Pelletier B., Chevillon C., Tachikawa H., Lefevre J., Marchesiello P. (2015) Modern carbonate sedimentary facies on the outer shelf and slope around New Caledonia. Island Arc, 24, 4-15

Yamano H., Iryu Y. (2015) Carbonate sedimentation on Pacific coral reefs. Island Arc, 24, 1-3

Yamano H., Satake K., Inoue T., Kadoya T., Hayashi S., Kinjo K., Nakajima D., Oguma H., Ishiguro S., Okagawa A., Suga S., Horie T., Nohara K., Fukayama N., Hibiki A. (2015) An integrated approach to tropical and subtropical island conservation. Journal of Ecology and Environment, 38, 271-279

Yamazaki A., Watanabe T., Tsunogai U., Hasegawa H., Yamano H. (2015) The coral δ¹⁵N record of the origins of terrestrial nitrate varies with river catchment land use. Coral Reefs, 34, 353-362

Yoshida K., Tokita K. (2015) Properties of ecosystems that are vulnerable during eco-fusion. Scientific Reports, 5, 7939

Yoshioka A., Mishima Y., Fukasawa K. (2015) Pollinators and Other Flying Insects Inside and Outside the Fukushima Evacuation Zone. PLoS ONE, 10, e0140957

• 2014

Cao H., Shimura Y., Kawachi M., Yin Y. (2014) Draft Genome Sequence of the Toxic Bloom-Forming Cyanobacterium Aphanizomenon flos-aquae NIES-81. Genome Announcements, 2, e00044-14

Cao R., Shen M., Chen J., Tang Y. (2014) A simple method to simulate diurnal courses of PAR absorbed by grassy canopy. Ecological Indicators, 46, 129-137

Demura M., Ioki M., Kawachi M., Nakajima N., Watanabe M. (2014) Desiccation tolerance of Botryococcus braunii (Trebouxiophyceae, Chlorophyta) and extreme temperature tolerance of dehydrated cells. Journal of Applied Phycology, 26, 49-53

Demura M., Nakayama T., Kasai F., Kawachi M. (2014) Genetic structure of Japanese Chattonella marina (Raphidophyceae) populations revealed using microsatellite markers. Phycological Research, 62, 102-108

Fang J., Kato T., Guo Z., Yang Y., Hu H., Shen H., Zhao X., Kishimoto-Mo A.W., Tang Y., Houghton R.A. (2014) Evidence for environmentally enhanced forest growth. PNAS: Proceedings of the National Academy of Sciences of the United States of America, 111, 9527-9532

Fujita K., Nagamine S., Ide Y., Umezawa Y., Hosono T., Kayanne H., Yamano H. (2014) Distribution of large benthic foraminifers around a populated reef island: Fongafale Island, Funafuti Atoll, Tuvalu. Marine Micropaleontology, 113, 1-9

Fukuda T., Katayama M., Kinoshita K., Kasugai T., Okamoto H., Kobayashi K. , Kurita M., Soichi M., Donai K., Uchida T., Onuma M., Sone H., Isogai E., Inoue-Murayama M. (2014) Primary fibroblast cultures and karyotype analysis for the olive ridley sea turtle (Lepidochelys olivacea). In Vitro Cellular & Developmental Biology - Animal, 50, 381-383

Fukushima M., Jutagate T., Grudpan C., Phomikong P., Nohara S. (2014) Potential effects of hydroelectric dam development in the Mekong River basin on the migration of Siamese mud carp (Henicorhynchus siamensis and H. lobatus) elucidated by otolith microchemistry. PLoS ONE, 9, e103722

Harii S., Hongo C., Ishihara M., Ide Y., Kayanne H. (2014) Impacts of multiple disturbances on coral communities at Ishigaki Island, Okinawa, Japan, during a 15 year survey. Marine Ecology Progress Series, 509, 171-180

Hayashi G., Shibato J., Imanaka T., Cho K., Kubo A., Kikuchi S., Satoh K., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Fukumoto M., Rakwal R. (2014) Unraveling low-level gamma radiation-responsive changes in expression of early and late genes in leaves of rice seedlings at litate Village, Fukushima. Journal of Heredity, 105, 723-738

Iguchi A., Kumagai N.H., Nakamura T., Suzuki A., Sakai K., Nojiri Y. (2014) Responses of calcification of massive and encrusting corals to past, present, and near-future ocean carbon dioxide concentrations. Marine Pollution Bulletin, 89, 348-355

Inoue M., Ishikawa D., Miyajima T., Yamazaki A., Suzuki A., Yamano H., Kawahata H., Watanabe T. (2014) Evaluation of Mn and Fe in coral skeletons (Porites spp.) as proxies for sediment loading and reconstruction of 50 yrs of land use on Ishigaki Island, Japan. Coral Reefs, 33, 363-373

Ishihama F., Fujii S., Yamamoto K., Takada T. (2014) Estimation of dieback process caused by herbivory in an endangered root-sprouting shrub species, Paliurus ramosissimus (Lour.) Poir., using a shoot-dynamics matrix model. Population Ecology, 56, 275-288

Kadoya T., Takenaka A., Ishihama F., Fujita T., Ogawa M., Katsuyama T., et al. (2014) Crisis of Japanese Vascular Flora Shown By Quantifying Extinction Risks for 1618 Taxa. PLoS ONE, 9, e98954

Kaneko K., Nohara S. (2014) The influence of changes in the degree and frequency of disturbance on the annual salt marsh plant (Suaeda maritima, Artemisia scoparia) communities in estuarine tidal flats: A case study of the Kushida River in Mie Prefecture, Japan. Open Journal of Ecology, 4, 1-10

Kaneko T., Ito H., Sakamoto H. , Onuma M., Inoue-Murayama M. (2014) Sperm Preservation by Freeze-Drying for the Conservation of Wild Animals. PLoS One, 9, e113381

Kato A., Hikami M., Kumagai N.H., Suzuki A., Nojiri Y., Sakai K. (2014) Negative effects of ocean acidification on two crustose coralline species using genetically homogeneous samples. Marine Environmental Research, 94, 1-6

Kawachi M., Mary-Helene N. (2014) Microbial Culture Collection at the National Institute for Environmental Studies, Tsukuba, Japan. PICES Press, 22, 43-45

Kizuka T., Akasaka M., Kadoya T., Takamura N. (2014) Visibility from roads predict the distribution of invasive fishes in agricultural ponds. PLoS ONE, 9, e99709

Kogawara S., Mohri T., Igasaki T., Nakajima N., Shinohara K. (2014) Drought and salt stress tolerance of ozone-tolerant transgenic poplar with an antisense DNA for 1-aminocyclopropane-1-carboxylate synthase. Bulletin of FFPRI, 13, 89-98

Maekawa F., Tsukahara S., Kawashima T., Nohara K., Ohki-Hamazaki H. (2014) The mechanisms underlying sexual differentiation of behavior and physiology in mammals and birds: relative contributions of sex steroids and sex chromosomes. Frontiers in Neuroscience, 8, 242

Magdaong E.T., Fujii M., Yamano H., Licuanan W.Y., Campos W.L., Alcala A.C., White A.T., Maypa A., Apistar D., Martinez R. (2014) Long-term change in coral cover and the effectiveness of marine protected areas in the Philippines: a meta-analysis. Hydrobiologia, 733, 5-17

Makino A., Yamano H., Beger M., Klein C.J., Yara Y., Possingham H.P. (2014) Spatio-temporal marine conservation planning to support high-latitude coral range expansion under climate change. Diversity and Distributions, 20, 859-871

Martel, A., Blooi M., Adriaensen C., Van R.P., Beukema W., Fisher M.C., Farrer R.A., Schmidt B.R., Tobler U., Goka K., Lips K.R., Muletz C., Zamudio K., Bosch J., Lotters S., Wombwell E., Garner T.W.J., Cunningham A.A., Spitzen-van der Sluijs A., Salvidio S., Ducatelle R., Nishikawa K., Nguyen T.T., Kolby J.E., Van B.I., Bossuyt F., Pasmans F. (2014) Recent introduction of a chytrid fungus endangers Western Palearctic salamanders. Science, 346, 630-631

Nakahira-Yanaka Y., Ioki M., Ohkoshi M., Nakajima N., Watanabe M.M. (2014) Herbicide-resistant mutants of Botryococcus braunii race B (strain BOT-₂₂). Journal of Applied Phycology, 26, 25-28

Nakajima K., Nansai K., Yamano H., Matsubae K., Murakami S. (2014) Global supply chain analysis of nickel: importance and possibility to control the resource logistics. Metallurgical Research & Technology, 111, 339-346

Nishihiro J., Akasaka M., Ogawa M., Takamura N. (2014) Aquatic vascular plants in Japanese lakes. Ecological Research, 29, 369

Okano T., Haga A., Mizuno E., Onuma M., Nakaya Y., Nagamine T. (2014) Angiostrongylus cantonensis (Nematoda: Metastrongylidae) in the Ryukyu Islands tree rat (Diplothrix legata (Thomas, 1906)). Journal of Wildlife Diseases, 50, 322-325

Okano T., Onuma M., Nakata K. (2014) Evaluation of the Genetic Diversity of the Ryukyu Long-furred Rat (Diplothrix legata) on Northern Okinawa-jima Island, Japan. Jpn. Japanese Journal of Zoo and Wildlife Medicine, 20, 9-14

Onuma M. (2014) Asian Society of Zoo and Wildlife Medicine: A possible core organization of wildlife disease surveillance network in East Asia and Oceania. Japanese Journal of Zoo and Wildlife Medicine, 19, 45-48

Oshima Y., Yoshino T., Mizuo A., Shimura R., Iima Y., Uebayashi A., Osa Y., Onuma M., Murata K., Asakawa M. (2014) A helminthological survey on Tancho, Grus japonensis, in Hokkaido, Japan. Japanese Journal of Zoo and Wildlife Medicine, 19, 31-35

Rand P.S., Fukushima M. (2014) Estimating the size of the spawning population and evaluating environmental controls on migration for a critically endangered Asian salmonid, Sakhalin taimen. Global Ecology and Conservation, 2, 214-225

Sanchez-Bayo F., Goka K. (2014) Pesticide Residues and Bees - A Risk Assessment. PLoS ONE, 9, e94482

Satoh K., Saji S., Ito S., Shimizu H., Saji H., Kikuchi S. (2014) Gene response in rice plants treated with continuous fog influenced by pH, was similar to that treated with biotic stress. Rice, 7, 10

Sawada H., Komatsu S., Tamaoki M., Kohno Y. (2014) Potential marker proteins for ozone-induced yield reduction in rice. Advances in Horticultural Science, 28, 100-104

Shen M., Tang Y., Chen J., Yang X., Wang C., Cui X., Yang Y., Han L., Li L., Du J., Zhang G., Cong N. (2014) Earlier-Season Vegetation Has Greater Temperature Sensitivity of Spring Phenology in Northern Hemisphere. PLoS ONE, 9, e88178

Shen M., Tang Y., Desai A.R., Gough C., Chen J. (2014) Can EVI-derived land-surface phenology be used as a surrogate for phenology of canopy photosynthesis?. International Journal of Remote Sensing, 35, 1162-1174

Sowa K., Watanabe T., Kan H., Yamano H. (2014) Influence of land development on Holocene Porites coral calcification at Nagura Bay, Ishigaki Island, Japan. PLoS ONE, 9, e88790

Takano Y., Yamaguchi H., Inouye I., Moestrup O., Horiguchi T. (2014) Phylogeny of five species of Nusuttodinium gen. nov. (Dinophyceae), a genus of unarmoured kleptoplastidic dinoflagellates. Protist, 165, 759-778

Tomaru A., Kawachi M., Demura M., Fukuyo Y. (2014) Changes in Microbial Communities, Including both Uncultured and Culturable Bacteria, with Mid-Ocean Ballast-Water Exchange during a Voyage from Japan to Australia. PLoS ONE, 9, 6274

Tanoi T., Kawachi M., Watanabe M. (2014) Iron and glucose effects on the morphology of Botryococcus braunii with assumption on the colony formation variability. Journal of Applied Phycology, 26, 1-8

Terui A., Miyazaki Y., Yoshioka A., Kadoya T., Jopp F., Washitani I. (2014) Dispersal of larvae of Margaritifera laevis by its host fish. Freshwater Science, 33, 112-123

Terui A., Miyazaki Y., Yoshioka A., Kaifu K., Matsuzaki S.S., Washitani I. (2014) Asymmetric dispersal structures a riverine metapopulation of the freshwater pearl mussel Margaritifera laevis. Ecology and Evolution, 4, 3004-3014

Tomaru A., Kawachi M., Demura M., Fukuyo Y. (2014) Changes in Microbial Communities, Including both Uncultured and Culturable Bacteria, with Mid-Ocean Ballast-Water Exchange during a Voyage from Japan to Australia. PLoS ONE, 9, e96274

Tomimatsu H., Iio A., Adachi M., Saw L.G., Tang Y. (2014) High CO₂ concentration increases relative leaf carbon gain under dynamic light in Dipterocarpus sublamellatus seedlings in a tropical rain forest, Malaysia. Tree Physiology, 34, 944-954

Wang S., Meng F., Duan J., Wang Y., Cui X., Piao S., Niu H., Xu G., Luo C., Zhang Z., Zhu X., Shen M., Li Y., Du M., Tang Y., Zhao X., Ciais P., Kimball B., Penuelas J., Janssens I., Cui S., Zhao L., Zhang F. (2014) Asymmetric sensitivity of first flowering date to warming and cooling in alpine plants. Ecology, 95, 3387-3398

Watanabe T., Kawamura T., Yamazaki A., Murayama M., Yamano H. (2014) A 106 year monthly coral record reveals that the East Asian summer monsoon modulates winter PDO variability. Geophys. Res. Lett., 41, 3609-3614

Wu Y., Zhang J., Deng Y., Wu J., Wang S., Tang Y., Cui X. (2014) Effects of warming on root diameter, distribution, and longevity in an alpine meadow. nt Ecology, 215, 1057-1066

Xia J., Liang S., Chen J., Yuan W., Liu S., Li L., Cai W, Zhang L., Fu Y., Zhao T., Feng J., Ma Z., Ma M., Liu S., Zhou G., Asanuma J., Chen S., Du M., Davaa G., Kato T., Liu Q., Liu S., Li S., Shao C., Tang Y., Zhao X. (2014) Satellite-Based Analysis of Evapotranspiration and Water Balance in the Grassland Ecosystems of Dryland East Asia. PLoS ONE, 9, e97295

Yamaguchi H., Nakayama T., Hongoh Y., Kawachi M., Inouye I. (2014) Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota). Journal of Plant Research, 127, 241-247

Yamano H., Cabioch G., Chevillon C., Join J.L. (2014) Late Holocene sea-level change and reef-island evolution in New Caledonia. Geomorphology, 222, 39-45

Yanaka N.Y., Ioki M., Ohkoshi M., Nakajima N. Watanabe M.M. (2014) Herbicide-resistant mutants of Botryococcus braunii race B (strain BOT-₂₂). Journal of Applied Phycology, 26, 25-28

Yara Y., Fujii M., Yamano H., Yamanaka Y. (2014) Projected coral bleaching in response to future sea surface temperature rises and the uncertainties among climate models. Hydrobiologia, 733, 19-29

Yasukochi T., Kayanne H., Yamaguchi T., Yamano H. (2014) Sedimentary facies andHolocene depositional processes of Laura Island, Majuro Atoll. Geomorphology, 222, 59-67

Yoshino T., Hama N., Onuma M., Takagi M., Sato K., Matsui S., Hisaka M., Yanai T., Ito H., Urano N., Osa Y., Asakawa M. (2014) Filarial nematodes belonging to superorders Diplotriaenoidea and Aproctoidea from wild and captive birds in Japan. Journal of Rakuno Gakuen University, 38, 139-148

Yoshioka A., Akasaka M., Kadoya T. (2014) Spatial prioritization for biodiversity restoration: a simple framework referencing past species distributions. Restoration Ecology, 22, 185-195

Yoshioka A., Miyazaki Y., Sekizaki Y., Suda S., Kadoya T., Washitani I. (2014) A "lost biodiversity" approach to revealing major anthropogenic threats to regional freshwater ecosystems. Ecological Indicators, 36, 348-355

Yoshioka A., Takada M.B., Washitani I. (2014) Landscape effects of a non-native grass facilitate source populations of a native generalist bug, Stenotus rubrovittatus, in a heterogeneous agricultural landscape. Journal of Insect Science, 14, 1-14

• 2013

Azuma N., Okano T., Tamaoki M., Nakajima N., Takamura N., Yokohata Y., Shindo J., Onuma M. (2013) Isolation and characterization of 25 polymorphic microsatellites of the large Japanese wood mouse (Apodemus speciosus). Conservation Genetics Resources, 5, 1001-1003

Aiba M., Katabuchi M., Hino T, Matsuzaki S.S., Sasaki T., Hiura T. (2013) Robustness of trait distribution metrics for community assembly studies under the uncertainties of assembly processes. Ecology, 94, 2873-2885

Cho K., Shibato J., Kubo A., Kohno Y., Satoh K., Kikuchi S., Agrawal G.K., Rakwal R. (2013) Genome-wide mapping of the ozone-responsive transcriptomes in rice panicle and seed tissues reveals novel insight into their regulatory events. Biotechnology Letters, 35, 647-656

Cho K., Shibato J., Kubo A., Kohno Y., Satoh K., Kikuchi S., Sarkar A., Agrawal G.K., Rakwal R. (2013) Comparative analysis of seed transcriptomes of ambient ozone-fumigated 2 different rice cultivars. Plant Signaling Behav., 8, e26300

Fukasawa K., Hashimoto T., Tatara M., Abe S. (2013) Reconstruction and prediction of invasive mongoose population dynamics from history of introduction and management: a Bayesian state-space modelling approach. Journal of Applied Ecology, 50, 469-478

Fukasawa K., Miyashita T., Hashimoto T., Tatara M., Abe S. (2013) Differential population responses of native and alien rodents to an invasive predator, habitat alteration, and plant masting. Proceedings of Royal Society B, Biological Sciences, 280, 20132075

Goka K., Okabe K., Takano A. (2013) Recent cases of invasive alien mites and ticks in Japan: why is a regulatory framework needed?. Experimental and Applied Acarology, 59, 245-261

Hagino K., Onuma, Kawachi M., Horiguchi T. (2013) Discovery of an Endosymbiotic Nitrogen-Fixing Cyanobacterium UCYN-A in Braarudosphaera bigelowii (Prymnesiophyceae). PLoS ONE, 8, e81749

Hongo C., Yamano H. (2013) Species-specific responses of corals to bleaching events on anthropogenically turbid reefs on Okinawa Island, Japan, over a 15-year period (1995-2009). PLoS ONE, 8, e60952

Ichii K., Kondo M., Lee Y.H., Wang S.Q., Kim J., Ueyama M., Lim H.J., Shi H., Suzuki T., Ito A., Kwon H., Ju W., Huang M., Sasai T., Asanuma J., Han S., Hirano T., Hirata R., Kato T., Li S.G., Li Y.N., Maeda T., Miyata A., Matsuura Y., Murayama S., Nakai Y., Ohta T., Saitoh T.M., Saigusa N., Takagi K., Tang Y.H., Wang H.M., Yu G.R., Zhang Y.P., Zhao F.H. (2013) Site-level model-data synthesis of terrestrial carbon fluxes in the CarboEastAsia eddy-covariance observation network: toward future modeling efforts. Journal of Forest Research, 18, 13-20

Inoue T., Asano T. (2013) Characteristics of Water Quality and Nitrogen-Associated Bacterial Functions in Mekong Delta Mangroves. Global Environmental Research, 17, 199-206

Inoue T., Fujimoto K. (2013) Key Studies on Tropical Mangrove Ecosystems. Global Environmental Research, 17, 145

Ioki M., Baba M., Nakajima N., Shiraiwa Y., Watanabe M.M. (2013) Codon usage of Botryococcus braunii (Trebouxiophyceae, Chlorophyta): implications for genetic engineering applications. Phycologia, 52, 352-356

Kameyama S., Miyamoto C., Suda S., Asano T., Nohara S. (2013) Nature Restoration of Mangrove Ecosystem in Northern Vietnam using Remote Sensing and GIS (From Shrimp Pond to Mangrove Forest). Proceedings of Regional Symposium on Mangrove Ecosystem Management in South East Asia, 182-187

Kameyama S., Shimazaki H., Nohara S., Sato T., Fujii Y., Kudo K. (2013) Hydrological and sediment transport simulation to assess the impact of dam construction in the Mekong River main channel. American Journal of Environmental Science, 9, 247-258

Kanaya G., Nakamura Y., Koizumi T., Yamada K., Koshikawa H., Kohzu A., Maki H. (2013) Temporal changes in carbon and nitrogen stable isotope ratios of macrozoobenthos on an artificial tidal flat facing a hypertrophic canal, inner Tokyo Bay. Marine Pollution Bulletin, 71, 179-189

Kaneko K., Nohara S. (2013) Vegetation communities in estuarine tidal flats in the different river and basin environments of the four major rivers of Ise Bay (Suzuka, Tanaka, Kushida and Miya), Mie Prefecture, Japan. Open Journal of Ecology, 3, 205-213

Kato T., Toyoda S., Yoshida N., Tang Y., Wada E. (2013) Isotopomer and isotopologue signatures of N₂O produced in alpine ecosystems on the Qinghai-Tibetan Plateau. Rapid Commun. Mass Spectrom., 27, 1517-1526

Kato T., Yamada K., Tang Y., Yoshida N., Wada E. (2013) Stable carbon isotopic evidence of methane consumption and production in three alpine ecosystems on the Qinghai-Tibetan Plateau. Atmospheric Environment, 77, 338-347

Kawahara-Miki R., Sano S., Nunome M., Shimmura T., Kuwayama T., Takahashi S., Kawashima T., Matsuda Y., Yoshimura T., Kono T. (2013) Next-generation sequencing reveals genomic features in the Japanese quail. Genomics, 101, 345-353

Kobayashi M.J., Takeuchi Y., Kenta T., Kume T., Diway B., Shimizu K.K. (2013) Mass flowering of the tropical tree Shorea beccariana was preceded by expression changes in flowering and drought-responsive genes. Molecular Ecology, 22, 4767-4782

Kubo A., Aono M., Nakajima N., Nishizawa T., Tamaoki M., Saji H. (2013) Characterization of hybrids between wild and genetically modified glyphosate-tolerant soybeans. Plant Biotechnology, 30, 335-345

Li J., Jiang S., Wang B., Jiang W., Tang Y., Du M., Gu S. (2013) Evapotranspiration and Its Energy Exchange in Alpine Meadow Ecosystem on the Qinghai-Tibetan Plateau. Journal of Integrative Agriculture, 12, 1396-1401

Li R., Luo T., Tang Y., Du M., Zhang X. (2013) The altitudinal distribution of a widespread cushion species is related to an optimum combination of temperature and preicipitation in central Tibetan Plateau. Journal of Arid Environments, 88, 70-77

Matsuzaki S.S., Sasaki T., Akasaka M. (2013) Consequences of the introduction of exotic and translocated species and future extirpations on the functional diversity of freshwater fish assemblages. Global Ecology and Biogeography, 22, 1071-1082

Moriguchi S., Amano T., Ushiyama K. (2013) Creating the distribution of Greater White-fronted Geese wintering in Japan. Ornithological Science, 12, 117-125

Moriguchi S., Onuma M., Goka K. (2013) Potential risk map for avian influenza A virus invading Japan. Diversity and Distributions, 19, 78-85

Moriyama A., Yonemura S., Kawashima S., Du M., Tang Y. (2013) Environmental indicators for estimating the potential soil respirationrate in alpine zone. Ecological Indicators, 32, 245-252

Namizaki N., Yamano H., Suzuki R., Oohori K., Onaga H., Kishimoto T., Sagawa T., Machida K., Yasumura S., Satou T., Shigiya T., Shibata T., Tsuchikawa M., Miyamoto Y., Harukawa K., Hirate Y., Furuse K., Hokoyama K., Yamanaka k., Wagatsuma T. (2013) The potential of citizen monitoring programs for marine areas : activities of the two-year Sango (Coral) Map Project. Galaxea, Journal of Coral Reef Studies, 15, 391-395

Nie L., Kubota M., Inoue T., Wu X. (2013) Effect of acid solutions on plants studied by the optical deflection method. Journal of Environmental Sciences, 25, S93-S96

Perry C.T., Kench P.S., Smithers S.G., Yamano H., O’Leary M., Gulliver P. (2013) Timescales and modes of reef lagoon infilling in the Maldives and controls on the onset of reef island formation. Geology, 41, 1111-1114

Satake K., Ueno R. (2013) Distribution of freshwater macroinvertebrates in streams with dams and associated reservoirs on a subtropical oceanic island off southern Japan. Limnology, 14, 211-221

Seo I., Lee Y.I., Watanabe T., Yamano H., Shimamura M., Yoo C.M., Hyeong K. (2013) A skeletal Sr/Ca record preserved in Dipsastraea (Favia) speciosa and implications for coral Sr/Ca thermometry in mid-latitude regions. Geochemistry, Geophysics, Geosystems, 14, 2873-2885

Seto M., Takamura N., Iwasa Y. (2013) Individual and combined suppressive effects of submerged and floating-leaved macrophytes on algal blooms. Journal of Theoretical Biology, 319, 122-133

Shen H., Wang S., Tang Y. (2013) Grazing alters warming effects on leaf photosynthesis and respiration in Gentiana straminea, an alpine forb species. Journal of Plant Ecology, 6, 418-427

Tsukahara K., Sawada H., Matsumura H., Kohno Y., Tamaoki M. (2013) Quantitative trait locus analyses of ozone-induced grain yield reduction in rice. Environmental and Experimental Botany, 88, 100-106

Usio N., Imada M., Nakagawa M., Akasaka M., Takamura N. (2013) Effects of pond draining on biodiversity and water quality of farm ponds. Conservation Biology, 27, 1429-1438

Wang Z., Luo T., Li R., Tang Y., Du M. (2013) Causes for the unimodal pattern of biomass and productivity in alpine grasslands along a large altitudinal gradient in semi-arid regions. Journal of Vegetation Science, 24, 189-201

Wu Y., Deng Y., Zhang J., Wu J., Tang Y., Cao G., Zhang F., Cui X. (2013) Root size and soil environments determine root lifespan: evidence from an alpine meadow on the Tibetan Plateau. Ecological Research, 28, 493-501

Yahara T., Javadi F., Onoda Y., de Queiroz L.P., Faith D.P., Prado D.E., Akasaka M., Kadoya T., Ishihama F., Davies S., Ferry Slik J.W., Yi T., Ma K., Bin C., Darnaedi D., Toby Pennington R., Tuda M., Shimada M., Ito M., Egan A.N., Buerki S., Raes N., Kajita T., Vatanparast M., Mimura M., Tachida H., Iwasa Y., Smith G.F., Victor J.F., Nkonki T. (2013) Global legume diversity assessment: Concepts, key indicators, and strategies. TAXON, 62, 249-266

Yamaguchi H., Nakayama T., Inouye I. (2013) Proposal of Microsquama subgen. nov. for Nephroselmis pyriformis (Carter) Ettl (Nephroselmidophyceae, Chlorophyta). Phycological Research, 61, 268-269

Yamano H. (2013) A skeletal Sr/Ca record preserved in Dipsastraea (Favia) speciosa and implications for coral Sr/Ca thermometry in mid-latitude regions. Geochemistry Geophysics Geosystems, 14, 2873-2885

Yu L., Wang H., Wang G., Song W., Huang Y., Li S.G., Liang N., Tang Y., He J.S. (2013) A comparison of methane emission measurements using eddy covariance and manual and automated chamber-based techniques in Tibetan Plateau alpine wetland. Environmental Pollution, 181, 81-90

Yumoto K., Kasai F., Kawachi M. (2013) Taxonomic re-examination of Chlamydomonas strains maintained in the NIES-Collection. Microbiology and Culture Collections, 29, 1-12

• 2012

Akasaka M., Takamura N. (2012) Hydrologic connection between ponds positively affects macrophyte alpha and gamma diversity but negatively affects beta diversity. Ecology, 93, 967-973

Baba M., Ioki M., Nakajima N., Shiraiwa Y., Watanabe M.M. (2012) Transcriptome analysis of an oil-rich race A strain of Botryococcus braunii (BOT-88-2) by de novo assembly of pyrosequencing cDNA reads. Bioresource Technology, 109, 282-286

Cho K., Kubo A., Shibato J., Agrawal G.K., Saji H., Rakwal R. (2012) Global identification of potential gene biomarkers associated with ozone-induced foliar injury in rice seedling leaves by correlating their symptom severity with transcriptome profiling. International Journal of Life Sciences, 6, 1-13

Demura M., Kawachi M., Koshikawa K.M., Nakayama T., Mayuzumi Y., Watanabe M.M. (2012) Succession of genetic diversity of Botryococcus braunii (Trebouxiophyceae) in two Japanese reservoirs. Procedia Environmental Sciences, 15, 3-11

Demura M., Mary-helene N., Kasai F, Watanabe M., Kawachi M. (2012) Life cycle of Chattonella marina (Raphidophyceae) inferred from analysis of microsatellite marker genotypes. Phycological Research, 60, 316-325

Hakoyama T., Niimi K., Yamamoto T., Isobe S., Sato S., Nakamura Y., Tabata S., Kumagai H., Umehara Y., Brossuleit K., Petersen T.R., Sandal N., Stougaard J., Udvardi M.K., Tamaoki M., Kawaguchi M., Kouchi H., Suganuma N. (2012) The integral membrane protein SEN1 is required for symbiotic nitrogen fixation in Lotus japonicus nodules. Plant and Cell Physiology, 53, 225-236

Hamada H., Kurusu T., Okuma E., Nokajima H., Kiyoduka M., Koyano T., Sugiyama Y., Okada K., Koga J., Saji H., Miyao A., Hirochika H., Yamane H., Murata Y., Kuchitsu K. (2012) Regulation of a proteinaceous elicitor-induced Ca²⁺ influx and production of phytoalexins by a putative voltage-gated cation channel, OsTPC1, in cultured rice cells. The Journal of Biological Chemistry, 287, 9931-9939

Han D., Cao G., Ge X., Zhang F., Li Y., Lin L., Tang Y., Gu S. (2012) The potential of carbon sink in alpine meadow ecosystem on the Qinghai Tibetan Plateau. Acta Ecologica Sinica, 31, 7408-7417

Hayasaka D., Akasaka M., Miyauchi D., Box E.O., Uchida T. (2012) Qualitative variation in roadside weed vegetation along an urban-rural road gradient. Flora, 207, 126-132

Hayasaka D., Goka K., Thawatchai W., Fujiwara K. (2012) Ecological impacts of the 2004 Indian Ocean tsunami on coastal sand-dune species on Phuket Island, Thailand. Biodiversity and Conservation, 21, 1971-1985

Hayasaka D., Kimura N., Fujiwara K., Thawatchai W., Nakamura T. (2012) The relationship between microenvironment of mangrove forests and epiphytic fern species richness along the Pan Yi River, Thailand. Journal of Tropical Forest Science, 24, 265-274

Hayasaka D., Korenaga T., Sanchez-Bayo F., Goka K. (2012) Differences in ecological impacts of systemic insecticides with different physicochemical properties on biocenosis of experimental paddy fields. Ecotoxicology, 21, 191-201

Hayasaka D., Korenaga T., Suzuki K., Saito F., Sanchez-Bayo F., Goka K. (2012) Cumulative ecological impacts of two successive annual treatments of imidacloprid and fipronil on aquatic communities of paddy mesocosms. Ecotoxicology and Environmental Safety, 80, 355-362

Hayasaka D., Korenaga T., Suzuki K., Sanchez-Bayo F., Goka K. (2012) Differences in susceptibility of five cladoceran species to two systemic insecticides, imidacloprid and fipronil. Ecotoxicology, 21, 421-427

Hayasaka D., Shimada N., Konno H., Sudayama H., Kawanishi M., Goka K. (2012) Floristic variation of beach vegetation caused by the 2011 Tohoku-oki tsunami in northern Tohoku, Japan. Ecological Engineering, 44, 227-232

Hongo C. (2012) Holocene key coral species in the Northwest Pacific: indicators of reef formation and reef ecosystem responses to global climate change and anthropogenic stresses in the near future. Quaternary Science Reviews, 35, 82-99

Imazato H., Onuma M., Nagamine T., Nakaya Y. (2012) Molecular species identification of predators of endangered species on Okinawa-jima Island. Mammal Study, 37, 159-164

Inoue M.N, Saito F., Tsuchida K., Goka K. (2012) Potential increase in mating frequency of queens in feral colonies of Bombus terrestris introduced into Japan. Naturwissenschaften, 99, 853-861

Ioki M., Baba M., Bidadi H., Suzuki I., Shiraiwa Y., Watanabe M.M., Nakajima N. (2012) Modes of hydrocarbon oil biosynthesis revealed by comparative gene expression analysis for race A and race B strains of Botryococcus braunii. Bioresource Technology, 109, 271-276

Ioki M., Baba M., Nakajima N., Shiraiwa Y., Watanabe M.M. (2012) Transcriptome analysis of an oil-rich race B strain of Botryococcus braunii (BOT-22) by de novo assembly of pyrosequencing cDNA reads. Bioresource Technology, 109, 292-296

Ioki M., Baba M., Nakajima N., Shiraiwa Y., Watanabe M.M. (2012) Transcriptome analysis of an oil-rich race B strain of Botryococcus braunii (BOT-70) by de novo assembly of 5’-end sequences of full-length cDNA clones. Bioresource Technology, 109, 277-281

Ioki M., Ohkoshi M., Nakajima N., Nakahira-Yanaka Y., Watanabe M.M. (2012) Isolation of herbicide-resistant mutants of Botryococcus braunii. Bioresource Technology, 109, 300-303

Ishihama F., Watabe Y., Oguma H. (2012) Validation of a high-resolution, remotely operated aerial remote-sensing system for the identification of herbaceous plant species. Applied Vegetation Science, 15, 383-389

Ito H., Kondo N. (2012) Biological pest control by investing crops in pests. Population Ecology, 54, 557-571

Iwai N., Kagaya T., Alford R.A. (2012) Feeding by omnivores increases food available to consumers. Oikos, 121, 313-320

Kadoya T., Osada Y., Takimoto G. (2012) IsoWeb: A Bayesian Isotope Mixing Model for Diet Analysis of the Whole Food Web. PLoS ONE, 7, e41057

Kadoya T., Washitani I. (2012) Use of multiple habitat types with asymmetric dispersal affects patch occupancy of the damselfly Indolestes peregrinus in a fragmented landscape. Basic and Applied Ecology, 13, 178-187

Kawachi M., Tanoi T., Demura M., Kaya K., Watanabe M.M. (2012) Relationship between hydrocarbons and molecular phylogeny of Botryococcus braunii. Algal Research, 1, 114-119

Kurusu T., Nishikawa D., Yamazaki Y., Gotoh M., Nakano M., Hamada H., Yamanaka T., Iida K., Nakagawa Y., Saji H., Shinozaki K., Iida H., Kuchitsu K. (2012) Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca²⁺ influx and modulates generation of reactive oxygen species in cultured rice cells. BMC Plant Biology, 12, 11

Matsumoto T., Kawachi M., Miyashita H., Inagaki Y. (2012) Prasinoxanthin is absent in the green-colored dinoflagellate Lepidodinium chlorophorum strain NIES-1868: pigment composition and 18S rRNA phylogeny. Journal of plant research, 125, 705-711

Matsuzaki S.S., Sakamoto M., Kawabe K., Takamura N. (2012) A laboratory study of the effects of shelter availability and invasive crayfish on the growth of native stream fish. Freshwater Biology, 57, 874-882

Matsuzaki S.S., von Wehrden H., Moller A.P., Takamura N. (2012) Fukushima disaster indirectly threatens lake ecosystems. Frontiers in Ecology & the Environment, 10, 464

Nakada S., Umezawa Y., Taniguchi M., Yamano H. (2012) Groundwater dynamics of Fongafale Islet, Funafuti Atoll, Tuvalu. Ground Water, 50, 639-644

Niitsu R., Kanazashi M., Matsuwaki I., Ikegami Y., Tanoi T., Kawachi M., Watanabe M.M., Kato M. (2012) Changes in the hydrocarbon-synthesizing activity during growth of Botryococcus braunii B70. Bioresource Technology, 109, 297-299

Nishizawa T., Tamaoki M., Kaneko Y., Aono M., Kubo A., Saji H., Nakajima N. (2012) High-throughput capture of nucleotide sequence polymorphisms in three Brassica species (Brassicaceae) using DNA microarrays. American Journal of Botany, 99, e94-e96

Nurdin N., Komatsu T., Yamano H, Arafat G., Rani C, Noer A. (2012) Hyperspectral Response: Key for Mapping Coral Rubber, Live and Dead Corals. Journal of Shipping and Ocean Engineering, 2, 182-190

Okabe K., Masuya H., Kanzaki N., Goka K. (2012) Species Risk Assessment of Microscopic Exotic Organisms Associated with Forest-Related Commodities and Goods. Human and Ecological Risk Assessment, 18, 1237-1254

Okamoto T., Hikida T. (2012) A new cryptic species allied to Plestiodon japonicus (Peters, 1864) (Squamata: Scincidae) from eastern Japan, and diagnoses of the new species and two parapatric congeners based on morphology and DNA barcode. Zootaxa, 3436, 1-23

Okamura H., Yagi M., Kawachi M., Hanyuda T., Kawai H., Walker I. (2012) Application of rotating cylinder method for ecotoxicological evaluation of antifouling paints. Toxicological & Environmental Chemistry, 94, 545-556

Okano T., Onuma M. (2012) Temporal Changes in the Testes and Baculum of the Siberian Weasel (Mustela sibirica coreana) in Tsushima Islands, Japan. Jpn. J. Zoo Wildl. Med., 17, 145-151

Okano T., Onuma M. Nagamine T., Nakaya Y. (2012) First record of Sarcocystis sp. infection in Ryukyu long-furred rats (Diplothrix legata). Jpn. J. Zoo Wildl. Med., 17, 157-160

Onuma M., Mitsuhiko Asakawa, Takashi Nagamine, Kuwana T. (2012) Duplex real-time PCR assay for the detction of two intestinal parasites, Heterakis isolonche and Glaphyrostomum sp., in Okinawa rail (Gallirallus okinawae). Japanese Journal of Zoo and Wildlife Medicine, 17, 27-31

Saghar Z., Kawachi M., Sano T., Watanabe M.M. (2012) Evidence of the existence of a toxic form of Cylindrospermopsis raciborskii (Nostocales, Cyanobacteria) in Japan. Phycological Research, 60, 98-104

Seki A., Yokoyama Y., Suzuki A., Kawakubo Y., Okai T., Miyairi Y., Matsuzaki H., Namizaki N., Kan H. (2012) Mid-Holocene sea-surface temperature reconstruction using fossil corals from Kume Island, Ryukyu, Japan. Geochemical Journal, 46, e27-e32

Shen M., Tang Y., Chen J., Yang W. (2012) Specification of thermal growing season in temperate China from 1960 to 2009. Climatic Change, 114, 783-798

Takamura N., Nakagawa M. (2012) Phytoplankton species abundance in Lake Kasumigaura (Japan) monitored monthly or biweekly since 1978. Ecological Research, 27, 837

Takamura N., Nakagawa M. (2012) The densities of bacteria, picophytoplankton, heterotrophic nanoflagellates and ciliates in Lake Kasumigaura (Japan) monitored monthly since 1996. Ecological Research, 27, 839

Tani N., Tani N., Tsumura Y., Fukasawa K., Kado T., Taguchi Y., Lee S.L., Lee C.T., Muhammad N., Niiyama K., Otani T., Yagihashi T., Ripin A., Kassim A.R. (2012) Male fecundity and pollen dispersal in hill dipterocarps: significance of mass synchronized flowering and implications for conservation. Journal of Ecology, 100, 405-415

Tomimatsu H., Tang Y. (2012) Elevated CO₂ differentially affects photosynthetic induction response in two Populus species with different stomatal behavior. Oecologia, 169, 869-878

Tournant P., Joseph L., Goka K., Courchamp F. (2012) The rarity and overexploitation paradox: stag beetle collections in Japan. Biodiversity and Conservation, 21, 1425-1440

Wakahama T., Laza-Martı´nez A., Taha A. , Okuyama H., Yoshida K., Kogame K., Awai K., Kawachi M., Maoka T. , Takaichi S. (2012) Structural Confirmation of a Unique Carotenoid Lactoside, P457, in Symbiodinium sp. Strain nbrc 104787 Isolated from a Sea Anemone and its Distribution in Dinoflagellates and Various Marine Organisms. Journal of Phycology, 48, 1392-1402

Weisler M.I., Yamano H., Hua Q. (2012) A multidisciplinary approach for dating human colonization of Pacific atolls. Journal of Island and Coastal Archaeology, 7, 102-125

Wu C., Chen J.M., Pumpanen J., Cescatti A., Marcolla B., Blanken P.D., Ardo J., Tang Y., Magliulo V., Georgiadis T., Soegaard H., Cook D.R., Harding R.J. (2012) An underestimated role of precipitation frequency in regulating summer soil moisture. Environmental Research Letters, 7, 024011

Yamada K., Kumagai N.H. (2012) Importance of seagrass vegetation for habitat partitioning between closely related species, mobile macrofauna Neomysis (Misidacea). Hydrobiologia, 680, 125-133

Yamano H., Sugihara K., Goto K., Kazama T., Yokoyama K., Okuno J. (2012) Ranges of obligate coral-dwelling crabs extend northward as their hosts move north. Coral Reefs, 31, 663

Yamano H., Sugihara K., Watanabe T., Shimamura M., Hyeong K. (2012) Coral reefs at 34°N, Japan: Exploring the end of environmental gradients. Geology, 40, 835-838

Yara Y., Vogt M., Fujii M., Yamano H., Hauri C., Steinacher M., Gruber N., Yamanaka Y. (2012) Ocean acidification limits temperature-induced poleward expansion of coral habitats around Japan. Biogeosciences, 9, 4955-4968

Zimmerman C.E., Rand P.S., Fukushima M., Zolotukhin S.F. (2011) Migration of Sakhalin taimen (Parahucho perryi): evidence of freshwater resident life history types. Environmental Biology of Fishes, 93, 223-232

• 2011

Akasaka M., Takamura N. (2011) Relative importance of hydrological connection and water quality on species richness of aquatic macrophytes in ponds: comparison between floating-leaved and submerged macrophytes. Oikos, 120, 38-46

Aono M., Wakiyama S., Nagatsu M., Kaneko Y., Nishizawa T., Nakajima N., Tamaoki M., Kubo A., Saji H. (2011) Seeds of a possible natural hybrid between herbicide-resistant Brassica napus and Brassica rapa detected on a riverbank in Japan. GM Crops and Food, 2, 201-210

Azuma N., Usio N., Korenaga T., Koizumi I., Takamura N. (2011) Genetic population structure of the invasive signal crayfish Pacifastacus leniusculus in Japan inferred from newly developed microsatellite markers. Plankton and Benthos Research, 6, 187-194

Cho K., Tiwari S., Agrawal S.B., Torres N.L., Agrawal M., Sarkar A., Shibato J., Agrawal G.K., Kubo A., Rakwal R. (2011) Tropospheric ozone and plants: Absorption, responses and consequences. Reviews of Environmental Contamination and Toxicology, 212, 61-111

Fukushima M., Shimazaki H., Rand P.S., Kaeriyama M. (2011) Reconstructing Sakhalin taimen Parahucho perryi historical distribution and identifying causes for local extinctions. Transactions of the American Fisheries Society, 140, 1-13

Hayasaka D., Akasaka M., Miyauchi D., Uchida T. (2011) Classification of roadside weeds along two highways in different climate zones according to ecomorphological traits. Weed Technology, 25, 411-421

Inoue T., Nohara S., Matsumoto K., Anzai T. (2011) What happens to soil chemical properties after mangrove plants colonize?. Plant Soil, 346, 259

Ioki M., Baba M., Bidadi H., Suzuki I., Shiraiwa Y., Watanabe M.M., Nakajima N. (2011) Modes of hydrocarbon oil biosynthesis revealed by comparative gene expression analysis for race A and race B strains of Botryococcus braunii. Bioresource Technology, 109, 271-276

Kadoya T., Akasaka M., Aoki T., Takamura N. (2011) A proposal of framework to obtain an integrated biodiversity indicator for agricultural ponds incorporating the simultaneous effects of multiple pressures. Ecological Indicators, 11, 1396-1402

Kadoya T., Washitani I. (2011) The Satoyama Index: a biodiversity indicator for agricultural landscapes. Agriculture, Ecosystems and Environment, 140, 20-26

Kato S., Misawa K., Takahashi F., Sakayama H., Sano S., Kosuge K., Kasai F., Watanabe M.M., Tanaka J., Nozaki H. (2011) Aquatic plant speciation affected by diversifying selection of organelle DNA regions. Journal of Phycology, 47, 999-1008

Kato T., Hirota M., Tang Y., Wada E. (2011) Spatial variability of CH₄ and N₂O fluxes in alpine ecosystems on the Qinghai-Tibetan Plateau. Atmospheric Environment, 45, 5632-5639

Kayanne H., Yasukochi T., Yamaguchi T., Yamano H., Yoneda M. (2011) Rapid settlement of Majuro Atoll, central Pacific, following its emergence at 2000 years CalBP. Geophysica Research Letters, 38, L20405

Kondo N. I., Tuda M., Toquenaga Y., Lan Y.C., Buranapanichpan S., Horng S.B., Shimada M., Fukatsu T. (2011) Wolbachia infections in world populations of bean beetles (Coleoptera: Chrysomelidae: Bruchinae) infesting cultivated and wild legumes. Zoological Science, 28, 501-508

Lepere C., Demura M., Kawachi M., Romac S., Probert I., Vaulot D. (2011) Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiology Ecology, 76, 513-523

Matsuzaki S.S., Takamura N., Arayama K., Tominaga A., Iwasaki J., Washitani I. (2011) Potential impacts of non-native channel catfish on commercially important species in a Japanese lake, as inferred from long-term monitoring data. Aquatic Conserv.: Mar. Freshw. Ecosyst., 21, 348-357

Matsuzaki S.S., Terui A., Kodama K., Tada M., Yoshida T., Washitani I. (2011) Influence of connectivity, habitat quality and invasive species on egg and larval distributions and local abundance of crucian carp in Japanese agricultural landscapes. Biol. Conserv., 144, 2081-2087

Mohri T., Kogawara S., Igasaki T., Yasutani I., Aono M., Nakajima N., Shinohara K. (2011) Improvement in the ozone tolerance of poplar plants with an antisense DNA for 1-aminocyclopropane-1-carboxylate synthase. Plant Biotechnology, 28, 417-421

Nishizawa T., Watano Y., Kinoshita E., Kawahara T., Nakajima N. (2011) Development and characterization of a novel set of microsatellite markers for Arisaema serratum (Araceae). American Journal of Botany, 98, e378-e381

Okada H., Niwa S., Takemoto S., Komatsuzaki M., Hiroki M. (2011) How different or similar are nematode communities between a paddy and an upland rice fields across a flooding-drainage cycle?. Soil Biology and Biochemistry, 43, 2142-2151

Onuma M., Kocherga M., Tyagunin V., Parilov M., Sasin A., Edyta S., Kuwana T. (2011) Evaluation of genetic diversity of wild Oriental white stork (Ciconia boyciana) in Russia and their phylogenetic relationship with extinct populations in Japan. Japanese Journal of Zoo and Wildlife Medicine, 16, 139-144

Onuma M., Kuwana T. (2011) Preliminary research on Mycoplasma synoviae vertical transmission rate into primordial germ cells. Journal of Poultry Science, 48, 212-215

Onuma M., Nagamine T., Nakaya Y., Neagari Y. (2011) Reproductive cycle observation of the Okinawa rail (Gallirallus okinawae) in the wild. Journal of Veterinary Medical Science, 73, 1169-1175

Onuma M., Yoshino T., Mizuo Ai., Kakogawa M., Asakawa M. (2011) First record of Porrocaecum semiteres (Zeder, 1800) Baylis, 1920 (Nematoda: Ascaridoidea) from a Superb Starling, Lamprotornis superbus Ruppell, 1845 with an overview of the genus Porrocaecum recorded from Japanese birds. Biogeography, 13, 55-59

Onuma M., Zhao C., Yoshino T., Nagamine T., Asakawa M. (2011) Parasitic helminths obtained from Okinawa rails, Gallirallus okinawae. J. Yamashina Inst. Ornithol., 43, 74-81

Perry C.T., Kench P.S., Smithers S.G., Riegl B., Yamano H., O’Leary M.J. (2011) Implications of reef ecosystem change for the stability and maintenance of coral reef islands. Global Change Biology, 17, 3679-3696

Piao S., Cui M., Chen A., Wang X., Ciais P., Liu J., Tang Y. (2011) Altitude and temperature dependence of change in the spring vegetation green-up date from 1982 to 2006 in the Qinghai-Xizang Plateau. Agricultural and Forest Meteorology, 151, 1599-1608

Sato Y., Yazawa K., Yoshida S., Tamaoki M., Nakajima N., Iwai H., Ishii T., Satoh S. (2011) Expression and functions of myo-inositol monophosphatase family genes in seed development of Arabidopsis. Journal of Plant Research, 124, 385-394

Senga Y., Hiroki M., Nakamura Y., Watarai Y., Watanabe Y., Nohara S. (2011) Vertical profiles of DIN, DOC, microbial activities in the peat soil in Kushiro Mire, Northeastern Japan. Limnology, 12, 17-23

Shen M., Tang Y., Chen J., Zhu X., Zheng Y. (2011) Influences of temperature and precipitation before the growing season on spring phenology in grasslands of the central and eastern Qinghai-Tibetan Plateau. Agricultural and Forest Meteorology, 151, 1711-1722

Terui A., Matsuzaki S.S., Kodama K., Tada M., Washitani I. (2011) Factors affecting the local occurrence of the near-threatened bitterling (Tanakia lanceolata) in agricultural canal networks: strong attachment to its potential host mussels. Hydrobiologia, 675, 19-28

Wang Y., Fang J.Y., Kato T., Guo Z.D., Zhu B., Mo W.H., Tang Y. (2011) Inventory-based estimation of aboveground net primary production in Japan’s forests from 1980 to 2005. Biogeosciences, 8, 2099-2106

Wu Y., Wu J., Deng Y., Tan H., Du Y., Gu S., Tang Y., Cui X. (2011) Comprehensive assessments of root biomass and production in a Kobresia humilis meadow on the Qinghai-Tibetan Plateau. Plant and Soil, 338, 497-510

Xu W., Gu S., Zhao X., Xiao J., Tang Y., Fang J., Zhang J., Jiang S. (2011) High positive correlation between soil temperature and NDVI from 1982 to 2006 in alpine meadow of the Three-River Source Region on the Qinghai-Tibetan Plateau. International Journal of Applied Earth Observation and Geoinformation, 13, 528-535

Yara Y., Oshima K., Fujii M., Yamano H., Yamanaka Y., Okada N. (2011) Projection and uncertainty of the poleward range expansion of coral habitats in response to sea surface temperature warming: A multiple climate model study. Galaxea, Journal of Coral Reef Studies, 13, 11-20