Biodiversity Division - Research Result (Publication) FY 2021

FY 2021

Original Paper

Unusual chromosome numbers and polyploidy in invasive fire ant populations

Presenter : , , , , SAKAMOTO Hironori, ,
Title：Genetica, 149:213-215 (2021)
Original Paper

Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation

Presenter : , , , , YAMAGUCHI Haruyo, , , , KAWACHI Masanobu, ,
Title：Scientific Reports, 11(22231): (2021)
Other Publications

Chapter 7D Tropical and subtropical coral reefs

Presenter : , , YAMANO Hiroya
(2021)
Other Publications

Short-term sediment plume event in the coral reef area of a small island captured by the Planet Dove satellite constellation

Presenter : , YAMANO Hiroya, ABE Hiroya
Title：Remote Sensing Letters, 12:1038-1048 (2021)
Original Paper

Effects of forest cover on richness of threatened fish species in Japan

Presenter : , , , , , , KAMEYAMA Satoshi, , , , ,
Title：Conservation Biology, 2021:1-10 (2021)
Original Paper

Calcification responses of subtropical corals to ocean acidification: a case study from Sesoko Island, Okinawa, Japan

Presenter : , , KUMAGAI Naoki, , ,
Title：GALAXEA, Journal of Coral Reef Studies, 24:51-61 (2021)
Original Paper

Effectiveness of signs of activity as relative abundance indices for wild boar

Presenter : , , , , FUKASAWA Keita, , ,
Title：Wildlife Biology, 2021(4):wlb.00869 (2021)
Original Paper

Occurrence patterns of crop-foraging sika deer distribution in an agriculture–forest landscape revealed by nitrogen stable isotopes

Presenter : , , FUKASAWA Keita, , , , , , , ,
Title：Ecology and Evolution, 11(21):15303-15311 (2021)
Original Paper

Intraspecific variations in life history traits of two pecky rice bug species from Japan: Mapping emergence dates and number of annual generations

Presenter : , , , , YOSHIOKA Akira, , ,
Title：Ecology and Evolution, 11:16936-16950 (2021)
Original Paper

Emergent dual scaling of riverine biodiversity

Presenter : , , , KADOYA Taku,
Title：PNAS, 118(47): (2021)
Original Paper

A statistical framework to track temporal dependence of chlorophyll–nutrient relationships with implications for lake eutrophication management

Presenter : , , , MATSUZAKI Shin-Ichiro, ,
Title：Journal of Hydrology, 603(D):127134 (2021)
Original Paper

Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade

Presenter : , , , , , , , , , , YAMAGUCHI Haruyo, , , , , KAWACHI Masanobu
Title：DNA Research, 28(6):dsab024 (2021)
Original Paper

Unstable Relationship Between Braarudosphaera bigelowii (= Chrysochromulina parkeae) and Its Nitrogen-Fixing Endosymbiont

Presenter : , KAWACHI Masanobu, , , , ,
Title：Frontiers in Plant Science, 12: (2021)
Original Paper

Claoxylon langbiangense (Euphorbiaceae), a New Species from Southern Vietnam

Presenter : , , , , , , , , ,
Title：Acta Phytotaxonomica et Geobotanica, 72(3):275-280 (2021)
Original Paper

Morphological and molecular evidence reveals three new species of Lithocarpus (Fagaceae) from Bidoup-Nui Ba National Park, Vietnam

Presenter : , , , , , , ,
Title：PhytoKeys, 186:73-92 (2021)
Original Paper

Warming of water temperature in spring and nutrient release from sediment in a shallow eutrophic lake

Presenter : SHINOHARA Ryuichiro, TSUCHIYA Kenji, KOZU Ayato
Title：Journal of Water and Climate Change, 12(7):3187 (2021)
Original Paper

High-resolution flow simulation in Typhoon 21, 2018: massive loss of submerged macrophytes in Lake Biwa

Presenter : NAKADA Satoshi, , , MABUCHI Koji,
Title：Progress in Earth and Planetary Science, 8(1):1-19 (2021)
Original Paper

Alternative Diatom Strains for Growth Inhibition Tests (OECD Test Guideline 201)

Presenter : , , YAMAGISHI Takahiro, YAMAGUCHI Haruyo
Title：Bull. Natl. Mus. Nat. Sci., Ser. B, 47(4):1-10 (2021)
Original Paper

Multispecies site occupancy modelling and study design for spatially replicated environmental DNA metabarcoding

Presenter : FUKAYA Keiichi, KONDO Natsuko, MATSUZAKI Shin-Ichiro, KADOYA Taku
Title：Methods in Ecology and Evolution (2021)
Original Paper

Fine-scale population fragmentation of a grassland butterfly Plebejus argyrognomon inhabiting agricultural field margin and riverbank in rural landscapes

Presenter : , , , , KONDO Natsuko
Title：Entomological Science, 24:382-390 (2021)
Original Paper

Dynamics of Nutrients and Colored Dissolved Organic Matter Absorption in a Wetland-Influenced Subarctic Coastal Region of Northeastern Japan: Contributions From Mariculture and Eelgrass Meadows

Presenter : , ABE Hiroya, ,
Title：Frontiers in Marine Science, 8(711832): (2021)
Original Paper

Loss of Ice Cover, Shifting Phenology, and More Extreme Events in Northern Hemisphere Lakes

Presenter : , , , , , , , , , , , , MATSUZAKI Shin-Ichiro, , , ,
Title：Journal of Geophysical Research: Biogeosciences, 126(10):e2021JG006348 (2021)
Book

Biodiversity conservation through various citizen activities in a flood control basin.

Presenter : NISHIHIRO Jun, ,
Title：Green Infrastructure: function, implementation and governance, ページ番号なし (2021)
Original Paper

Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters

Presenter : , , , , , , KAWACHI Masanobu
Title：Harmful Algae, 101: (2021)
Original Paper

Draft genome sequence of an anaerobic arsenite-oxidizing Halomonas sp. strain ANAO-440 isolated from an alkaline saline lake in Khovsgol, Mongolia.

Presenter : , , NAKAJIMA Nobuyoshi, YAMAMURA Shigeki
Title：Microbiology Resource Announcements (2021)
Book

Governance for realizing multifunctional floodplain; flood control, agriculture, and biodiversity in Yolo Bypass Wildlife Area, California, USA.

Presenter : , NISHIHIRO Jun,
Title：Green Infrastructure: function, implementation and governance, ページ番号なし (2021)
Original Paper

Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism

Presenter : , , , , , , KAWACHI Masanobu, , , , ,
Title：Proceedings of the National Academy of Sciences, 118(21): (2021)
Original Paper

Rappemonads are haptophyte phytoplankton

Presenter : KAWACHI Masanobu, , , , , , , , , , ,
Title：Current Biology, 31(11):2395-2403 (2021)
Original Paper

Genetic diversity of the endangered Japanese golden eagle at neutral and functional loci.

Presenter : , , NAKAJIMA Nobuyoshi, , , , ,
Title：Eecological Research, 36(5):815-829 (2021)
Original Paper

Highly mobile seed predators contribute to interisland seed dispersal within an oceanic archipelago

Presenter : ANDO Haruko, , , , , ,
Title：OIKOS (2021)
Original Paper

A comparative method for evaluating ecosystem services from the viewpoint of public works

Presenter : , , , , KUBO Takahiro, , , , , , , , , ,
Title：Ocean & Coastal Management, 212: (2021)
Original Paper

Could Nintendo’s Animal Crossing be a tool for conservation messaging?

Presenter : , , KUBO Takahiro,
Title：People and Nature (2021)
Original Paper

Disconnection between conservation awareness and outcome: Identifying a bottleneck on non-native species introduction via footwear

Presenter : , KUBO Takahiro, ,
Title：Journal of Environmental Management, 298: (2021)
Original Paper

Draft genome sequence of Cupriavidus sp. strain IK-TO18, isolated from antimony-contaminated sediment

Presenter : , NAKAJIMA Nobuyoshi, YAMAMURA Shigeki,
Title：Microbiology Resource Announcements, 10(38):e00724-21 (2021)
Original Paper

Green port structures and their ecosystem services in highly urbanized Japanese bays

Presenter : , , , , , KUBO Takahiro, , , , , , , , ,
Title：Coastal Engineering Journal, 63:310-322 (2021)
Original Paper

Relational values help explain green infrastructure preferences: The case of managing crane habitat in Hokkaido, Japan

Presenter : , , , KUBO Takahiro,
Title：People and Nature, 3:861-871 (2021)
Original Paper

Young citizen sensors for managing large carnivores: Lessons from 40years of monitoring a brown bear population

Presenter : , , , KUBO Takahiro, , ,
Title：Conservation Science and Practice (2021)
Original Paper

Genetic Structure of the Goniopora lobata and G. djiboutiensis Species Complex Is Better Explained by Oceanography Than by Morphological Characteristics

Presenter : , , , , ,
Title：frontiers in Marine Science (2021)
Original Paper

Distinct responses of growth and respiration to growth temperatures in two mangrove species

Presenter : INOUE Tomomi, AKAJI Yasuaki,
Title：Annals of Botany (2021)
Original Paper

Estimating the cost of coastal adaptation using mangrove forest against sea level rise

Presenter : , , INOUE Tomomi,
Title：Coastal Engineering Journal (2021)
Original Paper

Estimation of probable annual fine-root production and missing dead roots associated with the ingrowth core method: attempt with major mangrove species on Iriomote Island, southwestern Japan, locates in the subtropics

Presenter : , , , , INOUE Tomomi, ,
Title：Mangrove Science, 12:11-24 (2021)
Original Paper

SecSel, a new software tool for conservation prioritization that is applicable to ordinal-scale data for multiple biodiversity features

Presenter : ISHIHAMA Fumiko, , , OGUMA Hiroyuki
Title：PLOS ONE (2021)
Other Publications

Complete F mitochondrial genomes of two freshwater mussels from the Lake Biwa system in Japan: Beringiana fukuharai and Sinanodonta tumens

Presenter : MABUCHI Koji, , NAKAJIMA Nobuyoshi
Title：Mitochondrial DNA Part B, 6(9):2491-2493 (2021)
Other Publications

Complete female-transmitted mitochondrial genomes of two freshwater mussels from the Lake Biwa system in Japan: Nodularia douglasiae and N. nipponensis

Presenter : MABUCHI Koji, , NAKAJIMA Nobuyoshi
Title：Mitochondrial DNA Part B, 6(4):1536-1538 (2021)
Original Paper

Climate warming promotes Pacific oyster (Magallana gigas) production in a subarctic lagoon and bay, Japan: Projection of future trends using a three dimensional physical-ecosystem coupled model

Presenter : ABE Hiroya
Title：Regional Studies in Marine Science, 47(101968): (2021)
Original Paper

Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton

Presenter : , , , , , , , , , , , , , , , , YAMAGUCHI Haruyo, KAWACHI Masanobu,
Title：Nature Communications, 12(1):3593 (2021)
Original Paper

Effects of large‐scale forest fire followed by illegal logging on the regeneration of boreal forests in Mongolia

Presenter : , , , , , AKAJI Yasuaki, , ,
Title：Landscape and Ecological Engineering, 17(3):267-279 (2021)
Original Paper

Flora of Bokor National Park VIII : a new species of Cleyera (Pentaphylacaceae), C. bokorensis

Presenter : , , , , ,
Title：Acta Phytotaxonomica et Geobotanica, 72(2):145-151 (2021)
Original Paper

Morphology, phenology, and chromosomal observations in Najas minor and Najas chinensis from Iriomote Island, Okinawa, Japan

Presenter : , ,
Title：Acta Phytotaxonomica et Geobotanica, 72(2):167-177 (2021)
Original Paper

The enigmatic snow microorganism, Chionaster nivalis, is closely related to Bartheletia paradoxa (Agaricomycotina, Basidiomycota)

Presenter : , , , KAWACHI Masanobu, , ,
Title：Microbes and Environments, 36(2): (2021)
Original Paper

Development of a time-series shotgun metagenomics database for monitoring microbial communities at the Pacific coast of Japan

Presenter : , , , , , , , YAMAGUCHI Haruyo, , KAWACHI Masanobu, , , , , , , , , , , , ,
Title：Scientific Reports volume, 11:12222 (2021)
Original Paper

Climate-induced species range shift and local adaptation strategies in a temperate marine protected area, Ashizuri-Uwakai National Park, Shikoku Island, western Japan

Presenter : ABE Hiroya, , , KUMAGAI Naoki, , YAMANO Hiroya
Title：Ocean and Coastal Management, 210(105744): (2021)
Original Paper

Coupling high-resolution coral bleaching modeling with management practices to identify areas for conservation in a warming climate: Keramashoto National Park (Okinawa Prefecture, Japan)

Presenter : ABE Hiroya, KUMAGAI Naoki, YAMANO Hiroya,
Title：Science of the Total Environment, 790(148094): (2021)
Original Paper

Widespread deoxygenation of temperate lakes

Presenter : , , , , , , , , , , , , , , , , , , , , , , , , , MATSUZAKI Shin-Ichiro, , , , , , , , , , , , , , , ,
Title：Nature, 594:66-70 (2021)
Original Paper

The extent and variability of storm-induced temperature changes in lakes measured with long-term and high-frequency data

Presenter : , , , , , , , , , , , , , , , , , , , , , , , , MATSUZAKI Shin-Ichiro, , , , , , , , , , , ,
Title：Limnology and Oceanography, 66:1979-1992 (2021)
Original Paper

KAv-1 is Better Suited to Chick Fibroblast Culture than DMEM or 199 Media

Presenter : KATAYAMA Masafumi, ONUMA Manabu,
Title：The Journal of Poultry Science (2021)
Original Paper

Patterns of CO2 concentration and inorganic carbon limitation of phytoplankton biomass in agriculturally eutrophic lakes

Presenter : , , , , , , MATSUZAKI Shin-Ichiro, KOZU Ayato, , , , , , , ,
Title：Water Research, 190(15):116715 (2021)
Original Paper

Spatial optimization of invasive species control informed by management practices

Presenter : , , YOKOMIZO Hiroyuki, , , , , FUKASAWA Keita
Title：Ecological Applications, 31(3):e02261 (2021)
Original Paper

Growth and feeding behavior of fishes in organic rice-fish systems with various species combinations

Presenter : , , , , FUKUSHIMA Michio,
Title：Aquaculture Reports, 20: (2021)
Original Paper

Spatio-temporal niche plasticity of a freshwater invader as a harbinger of impact variability

Presenter : , , MATSUZAKI Shin-Ichiro, , ,
Title：Science of the Total Environment, 777:145947 (2021)
Original Paper

Annamia dubia sp. nov. with a description of a new family, Geminocystaceae fam. nov. (Cyanobacteria)

Presenter : , YAMAGUCHI Haruyo, ,
Title：Fottea, 21(1):100-109 (2021)
Original Paper

The Rubisco small subunits in the green algal genus Chloromonas provide insights into evolutionary loss of the eukaryotic carbon-concentrating organelle, the pyrenoid

Presenter : , , YAMAGUCHI Haruyo, KAWACHI Masanobu, , , ,
Title：BMC Ecology and Evolution, 21:11 (2021)
Original Paper

Estimations and projections of Avena fatua dynamics under multiple management scenarios in crop fields using simplified longitudinal monitoring

Presenter : , , FUKASAWA Keita
Title：PLOS ONE, 16(1):e0245217 (2021)
Original Paper

High rates of consecutive spawning and precise homing in Sakhalin taimen (Parahucho perryi)

Presenter : FUKUSHIMA Michio,
Title：Environmental Biology of Fishes, online: (2021)
Original Paper

Seasonal dynamics of the activities of dissolved 137Cs and the 137Cs of fish in a shallow, hypereutrophic lake: Links to bottom-water oxygen concentrations

Presenter : MATSUZAKI Shin-Ichiro, , KOZU Ayato, , , SHINOHARA Ryuichiro, , , UENO Ryuhei, , HAYASHI Seiji
Title：Science of The Total Environment, 761:143257 (2021)

Research Staff

Research Staff List