Latest Update：2026/01/28 10:29:18

YAMAMURA Shigeki

Researcher Name: YAMAMURA Shigeki

Div (Section) name/title: Regional Environment Conservation Division（Soil Environment Section）／Head

Research Subject: Bioremediation for arsenic-contaminated soil, Microbial cycling of arsenic in the environment

Degree(s): Doctor of engineering

Professional Qualification(s): Bioengineering,Civil Engineering

Environmental Speciality Field: environmental technology,water and soil environment,environmental microbes

URL: http://www.nies.go.jp/chiiki/kenkyusha/yamamura_shigeki.html

Research Subject

Fiscal Year: 2025
- 27247 : Regional Environment Conservation Domain: Foresight and Advanced Basic Research
- 27250 : Biodiversity Domain: Intellectual Research Infrastructure Development
- 27401 : Development of evaluation method for antibiotics-resistant bacterial communities in the environment using arsenic-metabolizing bacteria
- 27403 : Arsenic-reducing fermentative bacteria: Discovery of unknown causative microorganisms associated with groundwater arsenic contamination
Fiscal Year: 2024
- 26864 : Regional Environment Conservation Domain: Foresight and Advanced Basic Research
- 26869 : Biodiversity Domain: Intellectual Research Infrastructure Development
- 27028 : Development of evaluation method for antibiotics-resistant bacterial communities in the environment using arsenic-metabolizing bacteria
- 27029 : Arsenic-reducing fermentative bacteria: Discovery of unknown causative microorganisms associated with groundwater arsenic contamination
Fiscal Year: 2023
- 26453 : Regional Environment Conservation Domain: Foresight and Advanced Basic Research
- 26456 : Biodiversity Domain: Intellectual Research Infrastructure Development
- 26572 : Development of evaluation method for antibiotics-resistant bacterial communities in the environment using arsenic-metabolizing bacteria
- 26734 : Arsenic-reducing fermentative bacteria: Discovery of unknown causative microorganisms associated with groundwater arsenic contamination
Fiscal Year: 2022
- 26010 : Regional Environment Conservation Domain: Foresight and Advanced Basic Research
- 26014 : Biodiversity Domain: Intellectual Research Infrastructure Development
- 26210 : Elucidation of three-branched electron transfer chain in iodine-breathing bacteria.
Fiscal Year: 2021
- 25700 : Development of crystalline antimony recovery technique from wastewater using rare metal-respiring bacteria
- 25713 : Regional Environment Conservation Domain: Foresight and Advanced Basic Research
- 25811 : Biodiversity Domain: Intellectual Research Infrastructure Development
Fiscal Year: 2020
- 25196 : Project for the Promotion of Environmental Genomics Studies
- 25292 : Studies on the Application of Microorganisms for the Preservation of the Environment and its Risk Assessment
- 25293 : Development of crystalline antimony recovery technique from wastewater using rare metal-respiring bacteria
- 25393 : Elucidation of mechanism of rhizosphere effects for improvement of water purification capacity in Hybrid floating technology
Fiscal Year: 2019
- 24858 : Project for the Promotion of Environmental Genomics Studies
- 24946 : Elucidation of mechanism of rhizosphere effects for improvement of water purification capacity in Hybrid floating technology
- 24973 : Development of crystalline antimony recovery technique from wastewater using rare metal-respiring bacteria
- 24974 : Studies on the Application of Microorganisms for the Preservation of the Environment and its Risk Assessment
Fiscal Year: 2018
- 24446 : Project for The Promotion of Environmental Genomics studies
- 24562 : Development of the soil remediation system using arsenic-mobilizing bacteria and an arsenic hyperaccumulator plant
- 24563 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
Fiscal Year: 2017
- 23970 : Project for The Promotion of Environmental Genomics studies
- 23988 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
- 23989 : Development of the soil remediation system using arsenic-mobilizing bacteria and an arsenic hyperaccumulator plant
Fiscal Year: 2016
- 23484 : Project for The Promotion of Environmental Genomics studies
- 23557 : Studies on diffusion mechanisms of several raremetal elements dissolved from wastes into soil environment and their impact on microbial ecosystems
- 23592 : Development of the soil remediation system using arsenic-mobilizing bacteria and an arsenic hyperaccumulator plant
- 23653 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
Fiscal Year: 2015
- 23078 : Studies on diffusion mechanisms of several raremetal elements dissolved from wastes into soil environment and their impact on microbial ecosystems
- 23167 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
Fiscal Year: 2014
- 22857 : Studies on diffusion mechanisms of several raremetal elements dissolved from wastes into soil environment and their impact on microbial ecosystems
- 22858 : Effect of antibiotics on the microbial arsenic mobilization and immobilization
- 22864 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
Fiscal Year: 2013
- 22323 : Studies on diffusion mechanisms of several raremetal elements dissolved from wastes into soil environment and their impact on microbial ecosystems
- 22395 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
- 22396 : Effect of antibiotics on the microbial arsenic mobilization and immobilization
- 22423 : Coordinated study on environmental emission, behavior and effect of metals in high-tech products focusing on their lifecycle
Fiscal Year: 2012
- 21999 : Effect of antibiotics on the microbial arsenic mobilization and immobilization
- 22016 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
- 22060 : Coordinated study on environmental emission, behavior and effect of metals in high-tech products focusing on their lifecycle
Fiscal Year: 2011
- 21505 : Coordinated study on environmental emission, behavior and effect of metals in high-tech products focusing on their lifecycle
- 21567 : Studies on the application of microorganisms for the preservation of the environment and its risk assessment
- 21569 : Effect of antibiotics on the microbial arsenic mobilization and immobilization
Fiscal Year: 2010
- 21033 : The basic research on microbial community structure and evaluation of activity in water soil environment
- 21258 : Evaluation and prediction of nitrogen load from nitrogen saturated forest area and development of its reduction scenario
Fiscal Year: 2009
- 20435 : The basic research on microbial community structure and evaluation of activity in water soil environment
- 20479 : Arsenic removal from contaminated soils by simultaneous use of a dissimilatory arsenate-reducing bacterium and naturally occurring mediators.
Fiscal Year: 2008
- 20112 : Arsenic removal from contaminated soils by simultaneous use of a dissimilatory arsenate-reducing bacterium and naturally occurring mediators.
- 20171 : Evaluation of biodegradation-characteristic of organic compounds in anaerobic treatment of wastewater at ambient temperature
- 20178 : Development of wastewater treatment system that enables recycling of carbon-energy
- 20206 : The basic research on microbial community structure and evaluation of activity in water soil environment
Fiscal Year: 2007
- 10473 : The basic research on microbial community structure and evaluation of activity in water soil environment
- 10502 : Characterization of humic-reducing bacteria and thier application into bioremediation
- 10523 : Development of wastewater treatment system that enables recycling of carbon-energy
- 10567 : Evaluation of biodegradation-characteristic of organic compounds in anaerobic treatment of wastewater at ambient temperature
Fiscal Year: 2006
- 10218 : The basic research on microbial community structure and evaluation of activity in water soil environment
- 10246 : Characterization of humic-reducing bacteria and thier application into bioremediation
- 10262 : Development of wastewater treatment system that enables recycling of carbon-energy
- 10300 : Evaluation of biodegradation-characteristic of organic compounds in anaerobic treatment of wastewater at ambient temperature
Fiscal Year: 2005
- 9493 : The basic research on microbial community structure and evaluation of activity in water soil environment

View all

Research Result (Publication)

all
Original Paper
Book

Original Paper
Complete genome sequence of Pseudomonas sp. SCT, an iodate-reducing bacterium isolated from marine sediment in Japan

Presenter : Kuge H., Sato H., Yamamura S., Amachi S.
Title : , Microbiology Resource Announcements, 15(1):e00974-25 (2026)
Original Paper
Bromate reduction by Shewanella species depends on both endogenous and exogenous iron

Presenter : Takahashi N., Fujiya H., Sato H., Yamamura S., Amachi S.
Title : , Frontiers in Microbiology, 16:1643578 (2026)
Original Paper
Identification of bacterial dissimilatory antimonate reductase AnrA: genes and proteins involved in antimonate respiration and resistance in Geobacter sp. strain SVR

Presenter : Kambara R., Yamamura S., Amachi S.
Title : , Applied and Environmental Microbiology, 90(3):e0172923 (2024)
Original Paper
Draft genome sequence of Intrasporangium sp. DVR, an actinobacterium of the family Intrasporangiaceae isolated from soil in Japan

Presenter : Amachi S., Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements, 13(7):e00413-24 (2024)
Original Paper
Development of a floating constructed wetland for landfill leachate treatment and its potential to remove recalcitrant organic matter

Presenter : Ogata Y., Yamamura S., Nakajima N., Yamada M.
Title : , Water Research, 263:122154 (2024)
Original Paper
Iodate reduction by marine aerobic bacteria

Presenter : Kine K., Yamamura S., Amachi S.
Title : , Frontiers in Microbiology, 15:1446596 (2024)
Original Paper
Draft genome sequence of Pelosinus sp. IPA-1, a bacterium isolated from arsenic-contaminated soil in Japan

Presenter : Kuroda M., Yamamura S., Amachi S., Nakajima N.
Title : , Microbiology Resource Announcements, 12(9):e00323-23 (2023)
Original Paper
Complete genome sequence of Geobacter sp. strain SVR, an antimonate-reducing bacterium isolated from antimony-rich mine soil

Presenter : Warashina T, Yamamura S., Suzuki H., Amachi S.
Title : , Microbiology Resource Announcements, 10(14):e00142-21 (2021)
Original Paper
Production of two morphologically different antimony trioxides by a novel antimonate-reducing bacterium, Geobacter sp. SVR

Presenter : Yamamura S., Iida C., Kobayashi Y., Watanabe Mirai., Amachi S.
Title : , Journal of Hazardous Materials, 411:125100 (2021)
Original Paper
Draft genome sequence of an anaerobic arsenite-oxidizing Halomonas sp. strain ANAO-440 isolated from an alkaline saline lake in Khovsgol, Mongolia.

Presenter : Hamamura N, Damdinsuren N, Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements (2021)
Original Paper
Draft genome sequence of Cupriavidus sp. strain IK-TO18, isolated from antimony-contaminated sediment

Presenter : Okubo T., Nakajima N., Yamamura S., Hamamura N.
Title : , Microbiology Resource Announcements, 10(38):e00724-21 (2021)
Original Paper
A novel dimethylsulfoxide reductase family of molybdenum enzyme, Idr, is involved in iodate respiration by Pseudomonas sp. SCT

Presenter : Yamazaki C., Kashiwa S., Horiguchi A., Kasahara Y., Yamamura S., Amachi S.
Title : , Environmental Microbiology, 22(6):2196-2212 (2020)
Original Paper
Draft genome sequence of Geobacter sp. strain SVR, isolated from antimony mine soil

Presenter : Warashina T., Harada M., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Microbiology Resource Announcements, 9(26):e00461-20 (2020)
Original Paper
Possible involvement of a tetrathionate reductase homolog in dissimilatory arsenate reduction by Anaeromyxobacter sp. strain PSR-1

Presenter : Muramatsu F., Tonomura M., Yamada M., Kasahara Y., Yamamura S., Iino T., Amachi S.
Title : , Applied and Environmental Microbiology, 86(23):e00829-20 (2020)
Original Paper
Draft genome sequence of the antimony-oxidizing Pseudomonas sp. strain SbOxS1, isolated from stibnite mine tailing soil

Presenter : Hamamura N., Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements, 9(49):e01218-20 (2020)
Original Paper
Draft genome sequence of Stenotrophomonas sp. strain SbOxS2, an antimony-oxidizing bacterium isolated from stibnite mine tailing soil

Presenter : Hamamura N., Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements, 9(49):e01219-20 (2020)
Original Paper
137Cs transfer from canopies onto forest floors at Mount Tsukuba in the four years following the Fukushima nuclear accident

Presenter : Nishikiori T., Watanabe Mirai., Koshikawa-K.M., Watanabe K., Yamamura S., Hayashi S.
Title : , Science of the Total Environment, 659:783-789 (2019)
Original Paper
Draft genome sequence of a novel lactate-fermenting bacterial strain of the family Sporomusaceae within the class Negativicutes

Presenter : Aoyagi T., Kashiwabara Y., Kurasawa H., Amachi S., Nakajima N., Hori T., Yamamura S.
Title : , Microbiology Resource Announcements, 8(10):e01735-18 (2019)
Original Paper
Genomic analysis of Pseudomonas sp. strain SCT, an iodate-reducing bacterium isolated from marine sediment, reveals a possible use for bioremediation

Presenter : Harada M., Ito K., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , G3: Genes|Genomes|Genetics, 9:1321-1329 (2019)
Original Paper
Vertical variation of bulk and metabolically active prokaryotic community in sediment of a hypereutrophic freshwater lake

Presenter : Tsuboi S., Kohzu A., Imai A., Iwasaki K., Yamamura S.
Title : , Environmental Science and Pollution Research, 26:9379-9389 (2019)
Original Paper
Soil microbial communities involved in reductive dissolution of arsenic from arsenate-laden minerals with different carbon sources

Presenter : Yamamura S., Kurasawa H., Kashiwabara Y., Hori T., Aoyagi T., Nakajima N., Amachi S.
Title : , Environmental Science & Technology, 53:12398-12406 (2019)
Original Paper
Effect of extracellular electron shuttles on arsenic-mobilizing activities in soil microbial communities

Presenter : Yamamura S., Sudo T., Watanabe Mirai., Tsuboi S., Soda S., Ike K., Amachi S.
Title : , Journal of Hazardous Materials, 342:571-578 (2018)
Original Paper
Composition and Elution Behavior of Various Elements from Printed Circuit Boards, Cathode-ray Tube Glass, and Liquid-crystal Displays in Waste Consumer Electronics

Presenter : Inaba K., Murata T., Yamamura S., Nagano M., Iwasaki K., Nakajima D., Takigami H.
Title : , Analytical Sciences, 34(5):583-588 (2018)
Original Paper
Genomic Analysis of Rhodococcus sp. Br-6, a Bromate Reducing Bacterium Isolated From Soil in Chiba, Japan

Presenter : Ito K., Harada M., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Journal of Genomics, 6:122-126 (2018)
Original Paper
Draft genome sequence of Roseovarius sp. A-2, an iodide-oxidizing bacterium isolated from natural gas brine water, Chiba, Japan

Presenter : Yuliana T., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Journal of Genomics, 5:51-53 (2017)
Original Paper
Complete degradation of ethyl tert-butyl ether by co-culture of Rhodococcus erythropolis ET10 and Pseudonocardia benzenivorans No. 8

Presenter : Ohkubo N., Tsuboi S., Yamamura S., Iwasaki K., Yagi O.
Title : , Journal of Environmental Biotechnology, 17(1):73-81 (2017)
Original Paper
Growth rates and tolerance to low water temperature of freshwater bacterioplankton strains: ecological insights from shallow hypereutrophic lakes in Japan

Presenter : Watanabe K., Ishii Y., Komatsu N., Kitamura T., Watanabe Mirai., Yamamura S., Imai A., Hayashi S.
Title : , Hydrobiologia, 792(1):67-81 (2017)
Original Paper
Unexpected diversity of pepA genes encoding leucine aminopeptidases in sediments from a freshwater lake

Presenter : Tsuboi S., Yamamura S., Imai A., Iwasaki K.
Title : , Microbes and Environments, 31(1):49-55 (2016)
Original Paper
Impact of arsenite on the bacterial community structure and diversity in soil

Presenter : Dong D.T., Yamamura S., Amachi S.
Title : , Microbes and Environments, 31(1):41-48 (2016)
Original Paper
Microbial nitrification in throughfall of a Japanese cedar associated with archaea from the tree canopy

Presenter : Watanabe K., Kohzu A., Suda W., Yamamura S., Takamatsu T., Takenaka A., Koshikawa-K.M., Hayashi S., Watanabe Mirai.
Title : , SpringerPlus, 5(1596): (2016)
Original Paper
Draft genome sequence of Arenibacter sp. strain C-21, an iodine-accumulating bacterium isolated from surface marine sediment.

Presenter : Ito K., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Genome Announcements, 4(5):e1155-16 (2016)
Original Paper
Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils.

Presenter : Tsuboi S., Yamamura S., Nakajima-Kambe T., Iwasaki K.
Title : , SpringerPlus, 4(526): (2015)
Original Paper
Effect of Antibiotics on Redox Transformations of Arsenic and Diversity of Arsenite-Oxidizing Bacteria in Sediment Microbial Communities

Presenter : Yamamura S., Watanabe K., Suda W., Tsuboi S., Watanabe Mirai.
Title : , Environmental Science & Technology, 48:350-357 (2014)
Original Paper
Microbiology of inorganic arsenic: From metabolism to bioremediation

Presenter : Yamamura S., Amachi S.
Title : , Journal of Bioscience and Bioengineering, 118(1):1-9 (2014)
Original Paper
Linking Temporal Changes in Bacterial Community Structures with the Detection and Phylogenetic Analysis of Neutral Metalloprotease Genes in the Sediments of a Hypereutrophic Lake

Presenter : Tsuboi S., Yamamura S., Imai A., Satou T., Iwasaki K.
Title : , Microbes and Environments, 29(3):314-321 (2014)
Book
Microbial reduction and mobilization of arsenic for bioremediation of contaminated soil

Presenter : Yamamura S.
Title : , Handbook of Metal Biotechnology, Applications for Environmental Conservation and Sustainability (2012)
Original Paper
Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter: a demonstration using a high sensitivity cultivation-based approach

Presenter : Watanabe K., Komatsu N., Kitamura T., Ishii Y., Park H-D., Miyata R., Noda N., Sekiguchi Y., Satou T., Watanabe Mirai., Yamamura S., Imai A., Hayashi S.
Title : , Environmental Microbiology, 14(9):2511-2525 (2012)
Original Paper
Microbial biomass and nitrogen transformations in surface soils strongly acidified by volcanic hydrogen sulfide deposition in Osorezan, Japan

Presenter : Watanabe Mirai., Yamamura S., Takamatsu T., Koshikawa-K.M., Hayashi S., Murata T., Saito-S.S., Inubushi K., Sakamoto K.
Title : , Soil Sci.Plant Nutr., 56(1):123-132 (2010)
Original Paper
Pollution of montane soil with Cu, Zn, As, Sb, Pb, and nitrate in Kanto, Japan.

Presenter : Takamatsu T., Watanabe Mirai., Koshikawa-K.M., Murata T., Yamamura S., Hayashi S.
Title : , Sci.Total Environ., 408(8):1932-1942 (2010)
Original Paper
Slurry bioreactor modeling using a dissimilatory arsenate-reducing bacterium for remediation of arsenic-contaminated soil

Presenter : Soda S,, Kanzaki M,, Yamamura S., Kashiwa M,, Fujita M,, Ike M,
Title : , J.Biosci.Bioeng., 107(2):130-137 (2009)
Original Paper
Potential for microbially mediated redox transformations and mobilization of arsenic in uncontaminated soils

Presenter : Yamamura S., Watanabe Mirai., Yamamoto N,, Sei K,, Ike M,
Title : , Chemosphere, 77(2):169-174 (2009)
Original Paper
Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone

Presenter : Yamamura S., Watanabe Mirai., Kanzaki M., Soda S., Ike M.
Title : , Environ.Sci.Technol., 42(16):6154-6159 (2008)
Original Paper
Dry deposition of acidic air pollutants to tree leaves, determined by a modified leaf-washing technique

Presenter : Watanabe Mirai., Takamatsu T., Koshikawa-K.M., Yamamura S., Inubushi K.
Title : , Atmos.Environ., 42(32):7339-7347 (2008)
Bacillus selenatarsenatis sp. nov.,a selenate- and arsenate-reducing bacterium isolated from the effluent drain of a glass-manufacturing plant

Presenter : Yamamura S., Yamashita M.(*1), Fujimoto N.(*1), Kuroda M.(*1), Kashiwa M.(*1), Sei K.(*1), Fujita M.(*1), Ike M.(*1)
Title : , Int.J.Syst.Evol.Microbiol., 57:1060-1064 (2007)

View all

Complete genome sequence of Pseudomonas sp. SCT, an iodate-reducing bacterium isolated from marine sediment in Japan

Presenter : Kuge H., Sato H., Yamamura S., Amachi S.
Title : , Microbiology Resource Announcements, 15(1):e00974-25 (2026)
Bromate reduction by Shewanella species depends on both endogenous and exogenous iron

Presenter : Takahashi N., Fujiya H., Sato H., Yamamura S., Amachi S.
Title : , Frontiers in Microbiology, 16:1643578 (2026)
Identification of bacterial dissimilatory antimonate reductase AnrA: genes and proteins involved in antimonate respiration and resistance in Geobacter sp. strain SVR

Presenter : Kambara R., Yamamura S., Amachi S.
Title : , Applied and Environmental Microbiology, 90(3):e0172923 (2024)
Draft genome sequence of Intrasporangium sp. DVR, an actinobacterium of the family Intrasporangiaceae isolated from soil in Japan

Presenter : Amachi S., Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements, 13(7):e00413-24 (2024)
Development of a floating constructed wetland for landfill leachate treatment and its potential to remove recalcitrant organic matter

Presenter : Ogata Y., Yamamura S., Nakajima N., Yamada M.
Title : , Water Research, 263:122154 (2024)
Iodate reduction by marine aerobic bacteria

Presenter : Kine K., Yamamura S., Amachi S.
Title : , Frontiers in Microbiology, 15:1446596 (2024)
Draft genome sequence of Pelosinus sp. IPA-1, a bacterium isolated from arsenic-contaminated soil in Japan

Presenter : Kuroda M., Yamamura S., Amachi S., Nakajima N.
Title : , Microbiology Resource Announcements, 12(9):e00323-23 (2023)
Complete genome sequence of Geobacter sp. strain SVR, an antimonate-reducing bacterium isolated from antimony-rich mine soil

Presenter : Warashina T, Yamamura S., Suzuki H., Amachi S.
Title : , Microbiology Resource Announcements, 10(14):e00142-21 (2021)
Production of two morphologically different antimony trioxides by a novel antimonate-reducing bacterium, Geobacter sp. SVR

Presenter : Yamamura S., Iida C., Kobayashi Y., Watanabe Mirai., Amachi S.
Title : , Journal of Hazardous Materials, 411:125100 (2021)
Draft genome sequence of an anaerobic arsenite-oxidizing Halomonas sp. strain ANAO-440 isolated from an alkaline saline lake in Khovsgol, Mongolia.

Presenter : Hamamura N, Damdinsuren N, Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements (2021)
Draft genome sequence of Cupriavidus sp. strain IK-TO18, isolated from antimony-contaminated sediment

Presenter : Okubo T., Nakajima N., Yamamura S., Hamamura N.
Title : , Microbiology Resource Announcements, 10(38):e00724-21 (2021)
A novel dimethylsulfoxide reductase family of molybdenum enzyme, Idr, is involved in iodate respiration by Pseudomonas sp. SCT

Presenter : Yamazaki C., Kashiwa S., Horiguchi A., Kasahara Y., Yamamura S., Amachi S.
Title : , Environmental Microbiology, 22(6):2196-2212 (2020)
Draft genome sequence of Geobacter sp. strain SVR, isolated from antimony mine soil

Presenter : Warashina T., Harada M., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Microbiology Resource Announcements, 9(26):e00461-20 (2020)
Possible involvement of a tetrathionate reductase homolog in dissimilatory arsenate reduction by Anaeromyxobacter sp. strain PSR-1

Presenter : Muramatsu F., Tonomura M., Yamada M., Kasahara Y., Yamamura S., Iino T., Amachi S.
Title : , Applied and Environmental Microbiology, 86(23):e00829-20 (2020)
Draft genome sequence of the antimony-oxidizing Pseudomonas sp. strain SbOxS1, isolated from stibnite mine tailing soil

Presenter : Hamamura N., Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements, 9(49):e01218-20 (2020)
Draft genome sequence of Stenotrophomonas sp. strain SbOxS2, an antimony-oxidizing bacterium isolated from stibnite mine tailing soil

Presenter : Hamamura N., Nakajima N., Yamamura S.
Title : , Microbiology Resource Announcements, 9(49):e01219-20 (2020)
137Cs transfer from canopies onto forest floors at Mount Tsukuba in the four years following the Fukushima nuclear accident

Presenter : Nishikiori T., Watanabe Mirai., Koshikawa-K.M., Watanabe K., Yamamura S., Hayashi S.
Title : , Science of the Total Environment, 659:783-789 (2019)
Draft genome sequence of a novel lactate-fermenting bacterial strain of the family Sporomusaceae within the class Negativicutes

Presenter : Aoyagi T., Kashiwabara Y., Kurasawa H., Amachi S., Nakajima N., Hori T., Yamamura S.
Title : , Microbiology Resource Announcements, 8(10):e01735-18 (2019)
Genomic analysis of Pseudomonas sp. strain SCT, an iodate-reducing bacterium isolated from marine sediment, reveals a possible use for bioremediation

Presenter : Harada M., Ito K., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , G3: Genes|Genomes|Genetics, 9:1321-1329 (2019)
Vertical variation of bulk and metabolically active prokaryotic community in sediment of a hypereutrophic freshwater lake

Presenter : Tsuboi S., Kohzu A., Imai A., Iwasaki K., Yamamura S.
Title : , Environmental Science and Pollution Research, 26:9379-9389 (2019)
Soil microbial communities involved in reductive dissolution of arsenic from arsenate-laden minerals with different carbon sources

Presenter : Yamamura S., Kurasawa H., Kashiwabara Y., Hori T., Aoyagi T., Nakajima N., Amachi S.
Title : , Environmental Science & Technology, 53:12398-12406 (2019)
Effect of extracellular electron shuttles on arsenic-mobilizing activities in soil microbial communities

Presenter : Yamamura S., Sudo T., Watanabe Mirai., Tsuboi S., Soda S., Ike K., Amachi S.
Title : , Journal of Hazardous Materials, 342:571-578 (2018)
Composition and Elution Behavior of Various Elements from Printed Circuit Boards, Cathode-ray Tube Glass, and Liquid-crystal Displays in Waste Consumer Electronics

Presenter : Inaba K., Murata T., Yamamura S., Nagano M., Iwasaki K., Nakajima D., Takigami H.
Title : , Analytical Sciences, 34(5):583-588 (2018)
Genomic Analysis of Rhodococcus sp. Br-6, a Bromate Reducing Bacterium Isolated From Soil in Chiba, Japan

Presenter : Ito K., Harada M., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Journal of Genomics, 6:122-126 (2018)
Draft genome sequence of Roseovarius sp. A-2, an iodide-oxidizing bacterium isolated from natural gas brine water, Chiba, Japan

Presenter : Yuliana T., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Journal of Genomics, 5:51-53 (2017)
Complete degradation of ethyl tert-butyl ether by co-culture of Rhodococcus erythropolis ET10 and Pseudonocardia benzenivorans No. 8

Presenter : Ohkubo N., Tsuboi S., Yamamura S., Iwasaki K., Yagi O.
Title : , Journal of Environmental Biotechnology, 17(1):73-81 (2017)
Growth rates and tolerance to low water temperature of freshwater bacterioplankton strains: ecological insights from shallow hypereutrophic lakes in Japan

Presenter : Watanabe K., Ishii Y., Komatsu N., Kitamura T., Watanabe Mirai., Yamamura S., Imai A., Hayashi S.
Title : , Hydrobiologia, 792(1):67-81 (2017)
Unexpected diversity of pepA genes encoding leucine aminopeptidases in sediments from a freshwater lake

Presenter : Tsuboi S., Yamamura S., Imai A., Iwasaki K.
Title : , Microbes and Environments, 31(1):49-55 (2016)
Impact of arsenite on the bacterial community structure and diversity in soil

Presenter : Dong D.T., Yamamura S., Amachi S.
Title : , Microbes and Environments, 31(1):41-48 (2016)
Microbial nitrification in throughfall of a Japanese cedar associated with archaea from the tree canopy

Presenter : Watanabe K., Kohzu A., Suda W., Yamamura S., Takamatsu T., Takenaka A., Koshikawa-K.M., Hayashi S., Watanabe Mirai.
Title : , SpringerPlus, 5(1596): (2016)
Draft genome sequence of Arenibacter sp. strain C-21, an iodine-accumulating bacterium isolated from surface marine sediment.

Presenter : Ito K., Nakajima N., Yamamura S., Tomita M., Suzuki H., Amachi S.
Title : , Genome Announcements, 4(5):e1155-16 (2016)
Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils.

Presenter : Tsuboi S., Yamamura S., Nakajima-Kambe T., Iwasaki K.
Title : , SpringerPlus, 4(526): (2015)
Effect of Antibiotics on Redox Transformations of Arsenic and Diversity of Arsenite-Oxidizing Bacteria in Sediment Microbial Communities

Presenter : Yamamura S., Watanabe K., Suda W., Tsuboi S., Watanabe Mirai.
Title : , Environmental Science & Technology, 48:350-357 (2014)
Microbiology of inorganic arsenic: From metabolism to bioremediation

Presenter : Yamamura S., Amachi S.
Title : , Journal of Bioscience and Bioengineering, 118(1):1-9 (2014)
Linking Temporal Changes in Bacterial Community Structures with the Detection and Phylogenetic Analysis of Neutral Metalloprotease Genes in the Sediments of a Hypereutrophic Lake

Presenter : Tsuboi S., Yamamura S., Imai A., Satou T., Iwasaki K.
Title : , Microbes and Environments, 29(3):314-321 (2014)
Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter: a demonstration using a high sensitivity cultivation-based approach

Presenter : Watanabe K., Komatsu N., Kitamura T., Ishii Y., Park H-D., Miyata R., Noda N., Sekiguchi Y., Satou T., Watanabe Mirai., Yamamura S., Imai A., Hayashi S.
Title : , Environmental Microbiology, 14(9):2511-2525 (2012)
Microbial biomass and nitrogen transformations in surface soils strongly acidified by volcanic hydrogen sulfide deposition in Osorezan, Japan

Presenter : Watanabe Mirai., Yamamura S., Takamatsu T., Koshikawa-K.M., Hayashi S., Murata T., Saito-S.S., Inubushi K., Sakamoto K.
Title : , Soil Sci.Plant Nutr., 56(1):123-132 (2010)
Pollution of montane soil with Cu, Zn, As, Sb, Pb, and nitrate in Kanto, Japan.

Presenter : Takamatsu T., Watanabe Mirai., Koshikawa-K.M., Murata T., Yamamura S., Hayashi S.
Title : , Sci.Total Environ., 408(8):1932-1942 (2010)
Slurry bioreactor modeling using a dissimilatory arsenate-reducing bacterium for remediation of arsenic-contaminated soil

Presenter : Soda S,, Kanzaki M,, Yamamura S., Kashiwa M,, Fujita M,, Ike M,
Title : , J.Biosci.Bioeng., 107(2):130-137 (2009)
Potential for microbially mediated redox transformations and mobilization of arsenic in uncontaminated soils

Presenter : Yamamura S., Watanabe Mirai., Yamamoto N,, Sei K,, Ike M,
Title : , Chemosphere, 77(2):169-174 (2009)
Removal of arsenic from contaminated soils by microbial reduction of arsenate and quinone

Presenter : Yamamura S., Watanabe Mirai., Kanzaki M., Soda S., Ike M.
Title : , Environ.Sci.Technol., 42(16):6154-6159 (2008)
Dry deposition of acidic air pollutants to tree leaves, determined by a modified leaf-washing technique

Presenter : Watanabe Mirai., Takamatsu T., Koshikawa-K.M., Yamamura S., Inubushi K.
Title : , Atmos.Environ., 42(32):7339-7347 (2008)

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Microbial reduction and mobilization of arsenic for bioremediation of contaminated soil

Presenter : Yamamura S.
Title : , Handbook of Metal Biotechnology, Applications for Environmental Conservation and Sustainability (2012)

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Research Result (Presentation)

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Research Presentation

Research Presentation
Production of crystalline antimony trioxides by a dissimilatory antimonate-reducing bacteriu

Presenter : Yamamura S., Kobayashi Y., Amachi S.
Name of Society : Water and Environment Technology Conference 2019 (WET2019) (2019)
Name of Proceedings : Abstracts, 38
Research Presentation
Dissolution and migration behavior of major and trace metals derived from electronic waste in soil environment

Presenter : Murata T., Inaba K., Yamamura S., Iwasaki K., Nakajima D., Takigami H.
Name of Society : The 10th international conference of the Working Group (WG) on Soils of Urban, Industrial, Traffic, Mining and Military Areas (SUITMA10) (2019)
Name of Proceedings : SUITMA10 Final Program, 26
Research Presentation
Isolation of a dissimilatory antimonate [Sb(V)]-reducing Geobacteraceae bacterium strain SbR from antimony mine soil.

Presenter : Iida C., Yamamura S., Amachi S.
Name of Society : 23rd International Symposium on Environmental Biogeochemistry (2017)
Name of Proceedings : Abstracts, 64
Research Presentation
Enhancement of arsenic-mobilizing activities in soil microbial communities by electron shuttles.

Presenter : Yamamura S., Amachi S.
Name of Society : 23rd International Symposium on Environmental Biogeochemistry (2017)
Name of Proceedings : Abatracts, 69
Research Presentation
Characterization of soil microbial community involved in reductive dissolution of arsenic with different carbon sources

Presenter : Kurasawa H., Amachi S., Hori T., Yamamura S.
Name of Society : 23rd International Symposium on Environmental Biogeochemistry (2017)
Name of Proceedings : Abstracts, 57
Research Presentation
Genome analysis of Tepidibacillus sp. HK-1: an arsenic-metabolizing bacterium

Presenter : Mizuochi S., Suzuki H., Ito K., Adachi S., Tomita M., Yamamura S., Nakajima N.
Name of Society : Informatics In Biology, Medicine and Pharmacology 2017 (2017)
Name of Proceedings : なし
Research Presentation
Comparison of Bacterial Communities Harboring Alkane Hydroxylase Genes among Petroleum-Contaminated Soils and Roots of Planted Grasses.

Presenter : Tsuboi S., Yamamura S., Nakajima-Kambe T., Iwasaki K.
Name of Society : 9th IWA International Symposium on Waste Management Problems in Agro-Industries (2014)
Name of Proceedings : Abstracts, 218-225
Research Presentation
Microbial community structure on tree leaves

Presenter : Watanabe K. , Watanabe Mirai., Suda W., Koshikawa-K.M., Yamamura S., Nishikiori T., Takenaka A., Tada C., Seiwa K., Hayashi S.
Name of Society : The 28th Annual Meeting of the Japanese Society of Microbial Ecology (2012)
Name of Proceedings : Abstracts, 153
Research Presentation
Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter

Presenter : Watanabe K. , Imai A., Watanabe Mirai., Yamamura S., Hayashi S.
Name of Society : 2012 ASLO Aquatic Science Meeting (2012)
Name of Proceedings : Abstracts, 42
Research Presentation
Role of Redox Active Vitamins in Microbial Arsenic Mobilization

Presenter : Yamamura S., Watanabe K. , Watanabe Mirai., Soda S., Ike M.
Name of Society : IUMS 2011 Sapporo The unlimited world of Micribes (2011)
Name of Proceedings : Abstracts of IUMS 2011 Sapporo The unlimited world of Micribes
Research Presentation
Enhancement of microbial arsenic mobilization by natural mediators

Presenter : Yamamura S., Watanabe Mirai., Soda S., Ike M.
Name of Society : 19th Int.Symp.Environ.Biogeochem. (2009)
Name of Proceedings : Abstracts, 58
Research Presentation
Investigation of a novel psychrotolerant cellulose-degrading Bacteroidales species

Presenter : Tsushima I., Yoochatchaval W., Yamaguchi T., Yamamura S., Yoneyama Y., Syutsubo K.
Name of Society : 12th Int.Symp.Microbial Ecol.(ISME 12) (2008)
Name of Proceedings : Abstracts, 12:977
Research Presentation
Identification and detection of psychrotolerant cellulose-degrading bacteria

Presenter : Tsushima I., Yoochatchaval W., Yamaguchi T.(*1), Yamamura S., Yoneyama Y.(*2), Syutsubo K.
Name of Society : 21st Century COE Program,8th Int.Symp. Nagaoka Univ.Technol.(Poster Session) (2008)
Name of Proceedings : 8th Int.Symp.Proc.
Research Presentation
Effect of an electron-shuttling compound in microbial arsenic mobilization

Presenter : Yamamura S., Watanabe Mirai., Kanzaki M.(*1), Soda S.(*1), Fujita M.(*1), Ike M.(*1)
Name of Society : 18th Int.Symp.Environ.Biogeochem. (2007)
Name of Proceedings : Proceedings
Research Presentation
A bioreactor model for remediation of arsenic-contaminated soil

Presenter : Soda S.(*1), Kanzaki M.(*1), Yamamura S., Kashiwa M.(*2), Fujita M.(*3), Ike M.(*1)
Name of Society : IWA-2nd Aspire Asia Pac.Reg.Group Conf.Exhib. (2007)
Name of Proceedings : Proceedings(USB)

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Comparison of Bacterial Communities Harboring Alkane Hydroxylase Genes among Petroleum-Contaminated Soils and Roots of Planted Grasses.

Presenter : Tsuboi S., Yamamura S., Nakajima-Kambe T., Iwasaki K.
Name of Society : 9th IWA International Symposium on Waste Management Problems in Agro-Industries (2014)
Name of Proceedings : Abstracts, 218-225
Enhancement of microbial arsenic mobilization by natural mediators

Presenter : Yamamura S., Watanabe Mirai., Soda S., Ike M.
Name of Society : 19th Int.Symp.Environ.Biogeochem. (2009)
Name of Proceedings : Abstracts, 58
Identification and detection of psychrotolerant cellulose-degrading bacteria

Presenter : Tsushima I., Yoochatchaval W., Yamaguchi T.(*1), Yamamura S., Yoneyama Y.(*2), Syutsubo K.
Name of Society : 21st Century COE Program,8th Int.Symp. Nagaoka Univ.Technol.(Poster Session) (2008)
Name of Proceedings : 8th Int.Symp.Proc.
Effect of an electron-shuttling compound in microbial arsenic mobilization

Presenter : Yamamura S., Watanabe Mirai., Kanzaki M.(*1), Soda S.(*1), Fujita M.(*1), Ike M.(*1)
Name of Society : 18th Int.Symp.Environ.Biogeochem. (2007)
Name of Proceedings : Proceedings
A bioreactor model for remediation of arsenic-contaminated soil

Presenter : Soda S.(*1), Kanzaki M.(*1), Yamamura S., Kashiwa M.(*2), Fujita M.(*3), Ike M.(*1)
Name of Society : IWA-2nd Aspire Asia Pac.Reg.Group Conf.Exhib. (2007)
Name of Proceedings : Proceedings(USB)
Production of crystalline antimony trioxides by a dissimilatory antimonate-reducing bacteriu

Presenter : Yamamura S., Kobayashi Y., Amachi S.
Name of Society : Water and Environment Technology Conference 2019 (WET2019) (2019)
Name of Proceedings : Abstracts, 38
Dissolution and migration behavior of major and trace metals derived from electronic waste in soil environment

Presenter : Murata T., Inaba K., Yamamura S., Iwasaki K., Nakajima D., Takigami H.
Name of Society : The 10th international conference of the Working Group (WG) on Soils of Urban, Industrial, Traffic, Mining and Military Areas (SUITMA10) (2019)
Name of Proceedings : SUITMA10 Final Program, 26
Isolation of a dissimilatory antimonate [Sb(V)]-reducing Geobacteraceae bacterium strain SbR from antimony mine soil.

Presenter : Iida C., Yamamura S., Amachi S.
Name of Society : 23rd International Symposium on Environmental Biogeochemistry (2017)
Name of Proceedings : Abstracts, 64
Enhancement of arsenic-mobilizing activities in soil microbial communities by electron shuttles.

Presenter : Yamamura S., Amachi S.
Name of Society : 23rd International Symposium on Environmental Biogeochemistry (2017)
Name of Proceedings : Abatracts, 69
Characterization of soil microbial community involved in reductive dissolution of arsenic with different carbon sources

Presenter : Kurasawa H., Amachi S., Hori T., Yamamura S.
Name of Society : 23rd International Symposium on Environmental Biogeochemistry (2017)
Name of Proceedings : Abstracts, 57
Genome analysis of Tepidibacillus sp. HK-1: an arsenic-metabolizing bacterium

Presenter : Mizuochi S., Suzuki H., Ito K., Adachi S., Tomita M., Yamamura S., Nakajima N.
Name of Society : Informatics In Biology, Medicine and Pharmacology 2017 (2017)
Name of Proceedings : なし
Microbial community structure on tree leaves

Presenter : Watanabe K. , Watanabe Mirai., Suda W., Koshikawa-K.M., Yamamura S., Nishikiori T., Takenaka A., Tada C., Seiwa K., Hayashi S.
Name of Society : The 28th Annual Meeting of the Japanese Society of Microbial Ecology (2012)
Name of Proceedings : Abstracts, 153
Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter

Presenter : Watanabe K. , Imai A., Watanabe Mirai., Yamamura S., Hayashi S.
Name of Society : 2012 ASLO Aquatic Science Meeting (2012)
Name of Proceedings : Abstracts, 42
Role of Redox Active Vitamins in Microbial Arsenic Mobilization

Presenter : Yamamura S., Watanabe K. , Watanabe Mirai., Soda S., Ike M.
Name of Society : IUMS 2011 Sapporo The unlimited world of Micribes (2011)
Name of Proceedings : Abstracts of IUMS 2011 Sapporo The unlimited world of Micribes
Investigation of a novel psychrotolerant cellulose-degrading Bacteroidales species

Presenter : Tsushima I., Yoochatchaval W., Yamaguchi T., Yamamura S., Yoneyama Y., Syutsubo K.
Name of Society : 12th Int.Symp.Microbial Ecol.(ISME 12) (2008)
Name of Proceedings : Abstracts, 12:977

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YAMAMURA Shigeki

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