List of research papers 2017

all research papers in the past

  • Below is a list of peer-reviewed English research articles.

Adenyo, C., Ogden, B., Kayang, BB., Onuma, M., Nakajima, N., Inoue-Murayama, M. (2017). Genome-wide DNA markers to support genetic management for domestication and commercial production in a large rodent, the Ghanaian grasscutter (Thryonomys swinderianus). Animal Genetics, 48(1), 113-115. DOI: 10.1111/age.12478

Akasaka, M., Kadoya, T., Ishihama, F., Fujita, T., Fuller, R.A. (2017). Smart protected area placement decelerates biodiversity loss: a representation-extinction feedback leads rare species to extinction. Conservation Letters, 10(5), 539-546. DOI: 10.1111/conl.12302 online publication

Akiyama, T., Kohyama, T.I., Nishida, C., Onuma, M., Momose, K., Masuda, R. (2017). Genetic variation of major histocompatibility complex genes in the endangered red-crowned crane. Immunogenetics, 69(7), 451-462. DOI: 10.1007/s00251-017-0994-6

Akiyama, T., Momose, K., Onuma, M., Matsumoto, F., Masuda, R. (2017). Low Genetic Variation of Red-Crowned Cranes on Hokkaido Island, Japan, Over the Hundred Years. Zoological Science, 34(3), 211-216. DOI: 10.2108/zs160194

Akiyama, T., Nishida, C., Momose, K., Onuma, M., Takami, K., Masuda, R. (2017). Gene duplication and concerted evolution of mitochondrial DNA in crane species. Molecular Phylogenetics and Evolution, 106, 158-163. DOI: 10.1016/j.ympev.2016.09.026

Ando, H., Sasaki, T., Horikoshi, K., Suzuki, H., Chiba, H., Yamasaki, M., Isagi, Y. (2017). Wide-Ranging Movement and Foraging Strategy of the Critically Endangered Red-Headed Wood Pigeon (Columba janthina nitens): Findings from a Remote Uninhabited Island. Pacific Science, 71(2), 161-170. online publication

Andréfouët, S., Payri, C., Van Wynsberge, S., Lauret, O., Alefaio, S., Preston, G., Yamano, H., and Baudel, S. (2017). The timing and the scale of the proliferation of Sargassum polycystum in Funafuti Atoll, Tuvalu. Journal of Applied Phycology, 29, 3097-3108. DOI: 10.1007/s10811-017-1165-8online publication

Arnaud, C., Suzumura, T., Inoue, E., Adams, M., Weiss, A., Inoue-Murayama, M. (2017) Genes, social transmission, but not maternal effects influence responses of wild Japanese macaques (Macaca fuscata) to novel-object and novel-food tests. Primates, 58, 103-113. DOI: 10.1007/s10329-016-0572-9

Chan, E. W. C., Baba, S., Chan, H. T., Kainuma, M., Inoue, T., Wong, S. K. (2017). Ulam herbs: A review on the medicinal properties of Anacardium occidentale and Barringtonia racemose. Journal of Applied Pharmaceutical Science, 7(2), 241-247.

Duvat, V.K.E., Magnan, A.K., Wise, R.M., Hay, J.E., Fazey, I., Hinkel, J., Stojavinoc, T., Yamano, H., and Ballu, V. (2017). Trajectories of exposure and vulnerability of small islands to climate change. WIREs Climate Change. DOI:10.1002/wcc.478 online publication

Fujita, T. and Yamashina, C. (in press). Do consumer-mediated negative effects on plant establishment outweigh the positive effects of a nurse plant?. Ecology and Evolution. DOI:10.1002/ece3.3935 online publication new arrivals updated Feb. 7

Fukasawa, K., Mishima, Y., Yoshioka, A., Kumada, N., Totsu, K. (2017). Acoustic monitoring data of avian species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident. Ecological Research, 32(6), 769.

Fukuda, T., Tani, T., Haraguchi, S., Donai, K., Nakajima, N., Uenishi, H., Eitsuka, T., Miyagawa, M., Song, S., Onuma, M., Hoshino, Y., Sato, E., Honda, A. (2017). Expression of Six Proteins Causes Reprogramming of Porcine Fibroblasts Into Induced Pluripotent Stem Cells With Both Active X Chromosomes. Journal of Cellular Biochemistry, 118(3), 537-553. DOI: 10.1002/jcb.25727

Fukushima, M., Tomioka, N., Jutagate, T., Hiroki, M., Murata, M., Preecha, C., Avakul, P., Phomikong, P. and Imai, A. (2017). The dynamics of pico-sized and bloom-forming cyanobacteria in large water bodies in the Mekong River Basin. PLOS ONE, 12(12), e0189609. DOI: 10.1371/journal.pone.0189609 new arrival updated Dec. 8

Garcia-Molinos, J., Takao, S., Kumagai, N.H., Fujii, M., Burrows, M.T., Poloczanska, E.S., and Yamano, H. (2017). Improving the interpretability of climate landscape metrics: an ecological risk analysis of Japan's Marine Protected Areas. Global Change Biology, 23(10), 4440-4452. online publication

Hata, A., Takada, MB., Nakashita, R., Fukasawa, K., Oshida, T., Ishibashi, Y., Sato, Y. (2017). Stable isotope and DNA analyses reveal the spatial distribution of crop-foraging brown bears. Journal of Zoology, 303(3), 207–217. DOI: 10.1111/jzo.12479 online publication

Hiono, T., Okamatsu, M., Matsuno, K., Haga, A., Iwata, R., Nguyen, L.T., Suzuki, M., Kikutani, Y., Kida, H., Onuma, M., Sakoda, Y. (2017). Characterization of H5N6 highly pathogenic avian influenza viruses isolated from wild and captive birds in the winter season of 2016-2017 in Northern Japan. Microbiology and immunology, 61(9), 387-397.

Ikegami, M. and Jenkins, T.A.R. (2018). Estimate global risks of a forest disease under current and future climates using species distribution model and simple thermal model – Pine Wilt disease as a model case. Forest Ecology and Management, 409(1), 343–352. DOI:10.1016/j.foreco.2017.11.005 online publication New arrivals updated Nov. 28

Inoue, T., Kainuma, M., Baba, K., Oshiro, N., Kimura, N., Chan, E. W. C., (2017). Garcinia subelliptica (Fukugi): A Multi-purpose Coastal Tree with Promising Medicinal Properties. Journal of Intercultural Ethnopharmacology, 6(1), 121-127.

Ishii, Y., Hayashi, S., Takamura, N. (2017). Radiocesium Transfer in Forest Insect Communities after the Fukushima Dai-ichi Nuclear Power Plant Accident. PLOS ON, 12(1), e99709. DOI:10.1371/journal.pone.0099709

Ito, H., Ogden, R., Langenhorst, T., Inoue-Murayama, M.(2017) Contrasting results from molecular and pedigree-based population diversity measures in captive zebra highlight challenges facing genetic management of zoo populations. Zoo Biology, 36(1), 87-94. DOI:10.1002/zoo.21342

Iwai, N., Akasaka, M., Kadoya, T., Ishida, S., Aoki, T., Higuchi, S., Takamura, N. (2017). Examination of the link between life stages uncovered the mechanisms by which habitat characteristics affect odonates. Ecosphere, 8(9), e01930. DOI:10.1002/ecs2.193

Iwatsuki, Y., Nakajima, K., Yamano, H., Otsuki, A., and Murakami, S. (in press). Variation and changes in land-use intensities behind nickel mining: coupling operational and satellite data. Resources, Conservation and Recycling. DOI: 10.1016/j.resconrec.2018.02.028 online publication new arrivals updated Mar. 9

Katayama, M., Hirayama, T., Tani, T., Nishimori, K., Onuma, M., Fukuda, T. (2018). Chick derived induced pluripotent stem cells by the poly-cistronic transposon with enhanced transcriptional activity.Journal of Cellular Physiology, 233(2), 990-1004. DOI: 10.1002/jcp.25947

Kawatsu, K., Kishi, S. (in press). Identifying critical interactions in complex competition dynamics between bean beetles. Oikos. DOI: 10.1111/oik.04103 online publication

Kidera, N., Kadoya, T., Yamano, H., Takamura, N., Ogano, T., Wakabayashi, T., Takezawa, M., and Hasegawa, M. (2018). Hydrological effects of paddy improvement and abandonment on amphibian populations; long-term trends of the Japanese brown frog, Rana japonica. Biological Conservation, 219, 96-104. online publication new arrivals updated Feb. 5

Kimura, N., Kainuma, M., Inoue, T., Chan, E.W.C., Tangah, J., Baba, K., Oshiro, N., Okamoto, C. (2017). Botany, uses, chemistry and bioactivities of mangrove plants V: Acrostichum aureum and A. speciosum. ISME/GLOMIS, 15(1), 1-6.

Kishi, S., Goka, K. (2017). Review of the invasive yellow-legged hornet, Vespa velutina nigrithorax (Hymenoptera: Vespidae), in Japan and its possible chemical control. Applied Entomology and Zoology, 52(3), 361-368. DOI: 10.1007/s13355-017-0506-z online publication

Kishi, S., Sakura, N., Yoshikawa, T., Hiraiwa, M., Katoh, K. (2017). Interaction between insects and insect-pollinated plants on Miyake Island after a recent volcanic eruption: a comparison between vegetation types. Journal of Asia-Pacific Entomology, 20(3), 964-970. DOI: 10.1016/j.aspen.2017.07.006 online publication

Kobayashi, S., and Satake, K. (2017). Difference in body size and sexual dimorphism in the Ogasawara mitten crab Eriocheir ogasawaraensis and the Japanese mitten crab Eriocheir japonica. Pacific Science, 71(2), 171-188. online publication

Koide, D., Yoshida, K., Daehler, C.C., and Mueller-Dombois D. (2017). An upward elevation shift of native and non-native vascular plants over 40 years on the island of Hawai’i. Journal of Vegetation Science, 28(5), 939-950. DOI: 10.1111/jvs.1254

Kubo, T., Shoji, Y., Tsuge, T., Kuriyama, K. (2018). Voluntary contributions to hiking trail maintenance: Evidence from a field experiment in a national park, Japan. Ecological Economics, 144, 124-128. DOI: 10.1016/j.ecolecon.2017.07.032 online publication

Kumagai, N. H., Yamano, H., Sango-Map-Project, C. (2018). High-resolution modeling of thermal thresholds and environmental influences on coral bleaching for local and regional reef management. PeerJ, 6, e4382. DOI: 10.7717/peerj.4382 online publication new arrivals updated Feb. 22

MacDougall, A., Harvey, E., McCune, J., Nilsson, K., Bennett, J., Firn, J., Bartley, T., Grace, J., Kelly, J., Tunney, T., McMeans, B., Matsuzaki, S.S., Kadoya, T., Esch, E., Cazelles, K., Lester, N., McCann, K. (in press). Context-dependent interactions and the regulation of species richness in freshwater fish. Nature Communications. DOI: 10.1038/s41467-018-03419-1 online publication new arrivals updated Feb. 16

Makino, W., Maruoka, N., Nakagawa, M., Takamura, N. (2017). DNA barcoding of freshwater zooplankton in Lake Kasumigaura, Japan. Ecological Research, 32, 1. DOI:10.1007/s11284-017-1458-z

Makundi, I., Koshida, Y., Kuse, K., Hiratsuka, T., Ito, J., Baba, T., Watanabe, S., Kawamura, M., Odahara, Y., Miyake, A., Yamamoto, H., Kuniyoshi, S., Onuma, M., Nishigaki, K. (2017). Epidemiologic survey of feline leukemia virus in domestic cats on Tsushima Island, Japan: Management strategy for Tsushima leopard cats. Journal of Veterinary Diagnostic Investigation, 29(6), 889-895. DOI: 10.1177/1040638717725551

Mameno, K., Kubo, T., Suzuki, M. (2017). Social challenges of spatial planning for outdoor cat management in Amami Oshima Island, Japan. Global Ecology and Conservation, 10, 184-193. DOI:10.1016/j.gecco.2017.03.007 online publication

Meguro, H., Iwasa, M. A., Goka, K. and Abé, H.(2017). Molecular phylogenetic relationships of halacarid mites suggest the reevaluation of traditional subfamily classification. Acarologia, 57(3), 633–641. DOI: 10.24349/acarologia/20174182 online publication

Mitsui, S., Kubo, T., Yoshida, M. (2018). Analyzing the change in long-term information provision on cat management around a World Natural Heritage Site. European Journal Wildlife Research, 64, 9. online publication new arrivals updated Jan. 19

Mizumoto, H., Urabe, H., Kanbe, T., Fukushima, M. and Araki, H. (2017). Establishing an environmental DNA method to detect and estimate the biomass of Sakhalin taimen, a critically endangered Asian salmonid. Limnology, 1-9. DOI:10.1007/s10201-017-0535-x online publication New arrivals updated Dec. 8

Mori, M., Tsunoda, K., Aizawa, S., Saito, Y., Koike Y., Gonda, T., Abe, S., Suzuki, K., Yuasa, Y., Kuge, T., Tanaka, H., Arai, H., Watanabe, S., Nohara, S., Minai, Y., Okada, Y., and Nagao, S. (2017). Fractionation of radiocesium in soil, sediments, and aquatic organisms in Lake Onuma of Mt. Akagi, Gunma Prefecture using sequential extraction. Science of the Total Environment, 575, 1247-1254. DOI: 10.1016/j.scitotenv.2016.09.205

Nakaoka, M., Sudo, K., Namba, M., Shibata, H., Nakamura, F., Ishikawa, S., Makino, M., Yamano, H., Matsuzaki, S.S., Yamakita, T., Yu, X., Hou, X., Li, X., Brodie, J., Kanemoto, K., Moran, D., and Verones, F. (2018). TSUNAGARI: A new interdisciplinary and transdisciplinary study toward conservation and sustainable use of biodiversity and ecosystem services. Ecological Research, 33(1), 35–49. online publication

Nakashima, Y., Fukasawa, K., Samejima, H. (2018). Estimating animal density without individual recognition using information derivable exclusively from camera traps. Journal of Applied Ecology, 55(2), 735-744. DOI: 10.1111/1365-2664.13059 online publication

Nomura, T., Sakaguchi, A., Steier, P., Eigl, R., Yamakawa, A., Watanabe, T., Sasaki, K., Watanabe, T., Golser, R., Takahashi, Y., and Yamano, H. (2017). Reconstruction of temporal distribution of 236U/238U in the Northwest Pacific Ocean using a coral core from the Kuroshio Current area. Marine Chemistry, 190, 28-34.

Numajiri, Y., Kondo, N. I. and Toquenaga, Y. (2017). Melanic mutation causes a fitness decline in bean beetles infected by Wolbachia. Entomologia Experimentalis et Applicata, 164(1), 54–65. DOI:10.1111/eea.12588 online publication

Ohbayashi, K., Hodoki, Y., Kondo, N., Kunii, H., Shimada, M. (2017). A massive tsunami promoted gene flow and increased genetic diversity in a near threatened plant species. Scientific Reports, 7, 10933. link to press release online publication

Okamatsu, M., Ozawa, M., Soda, K., Takakuwa, H., Haga, A., Hiono, T., Matsuu, A., Uchida, Y., Iwata, R., Matsuno, K., Kuwahara, M., Yabuta, T., Usui, T., Ito, H., Onuma, M., Sakoda, Y., Saito, T., Otsuki, K., Ito, T., Kida, H. (2017). Characterization of Highly Pathogenic Avian Influenza Virus A(H5N6), Japan, November 2016. Emerging Infectious Diseases, 23(4), 691-695. DOI: 10.3201/eid2304.161957

Onuma, M., Kakogawa, M., Yanagisawa, M., Haga, A., Okano, T., Neagari, Y., Okano, T., Goka, K., Asakawa, M. (2017). Characterizing the temporal patterns of avian influenza virus introduction into Japan by migratory birds. Journal of Veterinary Medical Science, 79(5), 943-951. DOI: 10.1292/jvms.16-0604

Sakamoto, Y., Kumagai, N. H., and Goka, K. (2017) Declaration of local chemical eradication of the Argentine ant: Bayesian estimation with a multinomial-mixture model. Scientific Reports, 7. DOI:10.1038/s41598-017-03516-z link to press release online publication

Sakamoto, Y., Maeda, T., Yoshiyama, M., Pettis, JS. (2017). Differential susceptibility to the tracheal mite Acarapis woodi between Apis cerana and Apis mellifera. Apidologie, 48(2), 150-158. DOI:10.1007/s13592-016-0460-8 link to online publication

Sakamoto, Y., Yago, M. (2017). Potential for interspecific hybridization between Zizina emelina and Zizina otis (Lepidoptera: Lycaenidae). Journal of Insect Conservation, 21(3), 509-515. DOI:10.1007/s10841-017-9991-1 online publication

Saji, S., Bathula, S., Kubo, A., Tamaoki, M., Aono, M., Sano, T., Tobe, K., Timm, S., Bauwe, H., Nakajima, N., Saji, H. (2017). Ozone-sensitive Arabidopsis mutants with deficiencies in photorespiratory enzymes. Plant Cell Physiol., 58, 914-924. DOI: 10.1093/pcp/pcx027

Sekizawa, A., Uechi, H., Iguchi, A., Nakamura, T., Kumagai, N. H., Suzuki, A., Sakai, K., Nojiri, Y. (2017). Intraspecific variations in responses to ocean acidification in two branching coral species. Marine Pollution Bulletin, 122(1–2), 282-287. online publication

Senzaki M, Yamaura Y, Shoji Y, Kubo T, Nakamura F. (2017). Citizens promote the conservation of flagship species more than ecosystem services in wetland restoration. Biological Conservation, 214, 1-5. DOI: 10.1016/j.biocon.2017.07.025 online publication

Shimazaki, A., Yamaura, Y., Senzaki, M., Yabuhara, Y., & Nakamura, F. (2017). Mobbing call experiment suggests the enhancement of forest bird movement by tree cover in urban landscapes across seasons. Avian Conservation and Ecology, 12(1). DOI: 10.5751/ACE-01013-120116

Shimura Y., Hirose, Y. , Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. (2017). Complete genome sequence of a coastal cyanobacterium, Synechococcus sp. strain NIES-970. Genome Announcements, 5(14), e00139-17.

Shinohara, R., Hiroki, M., Kohzu, A., Imai, A., Inoue, T., Furusato, E., Komatsu, K., Satou, T., Tomioka, N., Shimotori, K. and Miura, S. (2017). Role of organic phosphorus in sediment in a shallow eutrophic lake. Water Resour. Res., 53(8), 7175–7189. DOI:10.1002/2017WR020486 online publication

Soga, M., Gaston, K, J., Kubo, T. (2018). Cross-generational decline in childhood experiences of neighborhood flowering plants in Japan. Landscape and Urban Planning, 174, 55-62. DOI: 10.1016/j.landurbplan.2018.02.009 online publication new arrivals updated Mar. 14

Suetsugu, K., Naiki, A., Takeuchi, Y., Toyama, H., Tagane, S., Yahara, T. (2017). New distributional records of the mycoheterotrophic plant, Sciaphila alba, outside the type locality. Acta Phytotaxonomica et Geobotanica, 68(2), 123-126.

Suzuki, K., Yamauchi, Y., Yoshida, T. (2017). Interplay between microbial trait dynamics and population dynamics revealed by the combination of laboratory experiment and computational approaches. Journal of Theoretical Biology, 419, 201-210.

Suzuki, K., Yoshida, K., Nakanishi, Y., and Fukuda, S. (2017). An equation-free method reveals the ecological interaction networks within complex microbial ecosystems. Methods in Ecology and Evolution, 8(12), 1774-1785. DOI: 10.1111/2041-210X.12814 online publication

Takamura, N.,Nakagawa, M.,Hanazato, T. (2017). Zooplankton abundance in the pelagic region of Lake Kasumigaura (Japan): Monthly data since 1980. Ecological Research, 32,1. DOI:10.1007/s11284-016-1406-3

Takeuchi, Y., Soda, R., Diway, B., Kuda, T., Nakagawa, M., Nagamasu, H., Nakashizuka, T. (2017). Biodiversity conservation values of fragmented communally reserved forests, managed by indigenous people, in a human-modified landscape in Borneo. PLoS ONE, 12(11), e0187273. online publication new arrivals updated Nov. 29

Usio, N., Nakagawa, M., Aoki, T., Higuchi, S., Kadono, Y., Akasaka, M., Takamura, N. (2017). Effects of land use on trophic states and multi-taxonomic diversity in Japanese farm ponds. Agricultural Ecosystems & Environment, 247, 205-215. DOI:10.1016/j.agee.2017.06.043

Weisler, M.I., Qua, H., Zhao, J.-X., Nguyen, A.D., Nothdurft, L., Yamano, H., and Mihaljević, M. (2018). Marine reservoir correction for the southern Marshall Islands for the past 2,500 years. Radiocarbon, 60(1), 333-348. DOI:10.1017/RDC.2017.63 online publication

Wilson, V., Weiss, A., Humle, T., Morimura, N., Udono, T., Idani, G., Matsuzawa, T., Hirata, S., Inoue-Murayama, M.(2017). Chimpanzee Personality and the Arginine Vasopressin Receptor 1A Genotype. Behavior Genetics, 47(2), 215-226. DOI:10.1007/s10519-016-9822-2

WU XZ., WU X., Inoue, T. (2017). Real-time in-situ Simultaneous Monitoring of Dissolved Oxygen and Materials Movements at a Vicinity of Micrometers from an Aquatic Plant by Combining Deflection of a Probe Beam and Fluorescence Quenching. Analytical Sciences, 33, 351-355.

Yamada, K., Miyazaki, K., Tomiyama, T., Kanaya, G., Miyama, Y., Yoshinaga, T., Wakui, K., Tamaoki, M., Toba, M. (2017). Impact of sea spider parasitism on host clams: susceptibility and intensity-dependent mortality. J. Mar. Biol. Assoc. UK. DOI:10.1017/S0025315417000200 online publication

Yamano, H., Kayanne, H., Yamaguchi, T., Inoue, T., Mochida, Y., and Baba, S. (2017). Revisiting late Holocene sea-level change from the Gilbert Islands, Kiribati, west-central Pacific Ocean. Quaternary Research, 88, 400-408.

Yasuda, M., Sakamoto, Y., Goka, K., Nagamitsu, T., Taki, H. (2017). Insecticide susceptibility in Asian honey bees (Apis cerana) and implications for wild honey bees in Asia. Journal of Economic Entomology, 110(2), 447-452. DOI:10.1093/jee/tox032 online publication

Yoshioka, A., Fukasawa, K., Mishima, Y., Sasaki, K. and Kadoya, T. (2017). Ecological dissimilarity among land-use/land-cover types improves a heterogeneity index for predicting biodiversity in agricultural landscapes. Ambio, 46(8), 894-906. DOI:10.1007/s13280-017-0925-7 online publication

Yuliana, T., Nakajima, N., Yamamura, S., Tomita, M., Suzuki, H., Amachi, S. (2017). Draft genome sequence of Roseovarius sp. A-2, an iodide-oxidizing bacterium isolated from natural gas brine water, Chiba, Japan. Journal of Genomics, 5, 51-53.

Wilson, V., Weiss, A., Humle, T., Morimura, N., Udono, T., Idani, G., Matsuzawa, T., Hirata, S., Inoue-Murayama, M.(2017). Chimpanzee Personality and the Arginine Vasopressin Receptor 1A Genotype. Behavior Genetics, 47(2), 215-226. DOI:10.1007/s10519-016-9822-2

Last updated Mar. 14, 2018