Birds

• Amami Woodcock
• Bali Myna
• Blakiston's Fish-Owl
• Common Murre
• Golden Eagle
• Hooded Crane
• Humboldt Penguin
• Japanese Night Heron
• Japanese Rock Ptarmigan
• Japanese White Stork
• Large-billed Crow
• Mountain Hawk-Eagle
• Northern Goshawk
• Okinawa Rail
• Okinawa Woodpecker
• Peregrine Falcon
• Red-crowned Crane
• Red-headed Wood Pigeon
• Short-tailed Albatross
• Sparrowhawk
• Steller's Sea Eagle
• Tufted Puffin
• White-necked Crane
• White-tailed Eagle
• Whooper Swan

Amami Woodcock

1. Scientific name: Scolopax mira
2. Download genome data in FASTA format (ZIP: 308MB)
3. Genome DDBJ accession number: BJBW01000001-BJBW01040750 (40750 entries)
4. Joint research with: Rakuno Gakuen University

Bali Myna

1. Scientific name: Leucopsar rothschildi
2. Download genome data in FASTA format (ZIP: 281MB)
3. Genome DDBJ accession number: BMBG01000001-BMBG01013134 (13134 entries)
4. Joint research with: Rakuno Gakuen University; Preservation and Research Center, City of Yokohama

Blakiston's Fish-Owl

1. Scientific name: Bubo blakistoni
2. Download genome data in FASTA format (ZIP: 337MB)
3. Genome DDBJ accession number: BJCB01000001-BJCB01046772 (46772 entries)
4. Joint research with: Rakuno Gakuen University

Common Murre

1. Scientific name: Uria aalge inornata
2. Download genome data in FASTA format (ZIP: 296MB)
3. Genome DDBJ accession number: BMBJ01000001-BMBJ01042406 (42406 entries)
4. Joint research with: Rakuno Gakuen University

Golden Eagle

1. Scientific name: Aquila chrysaetos japonica
2. Download genome data in FASTA format (ZIP: 339MB)
3. Genome DDBJ accession number: BJEW01000001-BJEW01035366 (35366 entries)
4. Joint research with: Wildlife Research Center of Kyoto University; Rakuno Gakuen University; Akita City Omoriyama Zoo

Hooded Crane

1. Scientific name: Grus monacha
2. Download genome data in FASTA format (ZIP: 335MB)
3. Genome DDBJ accession number: BJET01000001-BJET01045731 (45731 entries)
4. Download mRNA data in FASTA format (ZIP: 15 MB)
5. DDBJ accession number: ICSX01000001-ICSX01060783 (60783 entries)
6. Joint research with: Rakuno Gakuen University; Kagoshima University

Humboldt Penguin

1. Scientific name: Spheniscus humboldti
2. Download genome data in FASTA format (ZIP: 347MB)
3. Genome DDBJ accession number: BLXI01000001-BLXI01056372 (56372 entries)
4. Joint research with: Wildlife Research Center of Kyoto University; Rakuno Gakuen University

Japanese Night Heron

1. Scientific name: Gorsachius goisagi
2. Download genome data in FASTA format (ZIP: 336MB)
3. Genome DDBJ accession number: BOSO01000001-BOSO01056945 (56945 entries)
4. Joint research with: Rakuno Gakuen University; NPO Corporation Doubutsutachi no Byouin Okinawa

Japanese Rock Ptarmigan

1. Scientific name: Lagopus mutus japonicus
2. Download genome data in FASTA format (ZIP: 280MB)
3. Genome DDBJ accession number: BJCA01000001-BJCA01062806 (62806 entries)
4. Joint research with: Rakuno Gakuen University

Japanese White Stork

1. Scientific name: Ciconia boyciana
2. Download genome data in FASTA format (ZIP: 348MB)
3. Genome DDBJ accession number: BDFF02000001-BDFF02050011 (50011 entries)
4. Download mRNA data in FASTA format (ZIP: 14 MB)
5. DDBJ accession number: ICSP01000001-ICSP01066347 (66347 entries)
6. Joint research with: Rakuno Gakuen University

Large-billed Crow

1. Scientific name: Corvus macrorhynchos
2. Download genome data in FASTA format (ZIP: 287MB)
3. Genome DDBJ accession number: BMBD01000001-BMBD01016523 (16523 entries)
4. Joint research with: Rakuno Gakuen University

Mountain Hawk-Eagle

1. Scientific name: Nisaetus nipalensis
2. Download genome data in FASTA format (ZIP: 340MB)
3. Genome DDBJ accession number: BJES01000001-BJES01038768 (38768 entries)
4. Joint research with: Rakuno Gakuen University; Institute for Raptor Biomedicine Japan

Northern Goshawk

1. Scientific name: Accipiter gentilis
2. Download genome data in FASTA format (ZIP: 335MB)
3. Genome DDBJ accession number: BJER01000001-BJER01025797 (25797 entries)
4. Download mRNA data in FASTA format (ZIP: 12 MB)
5. DDBJ accession number: ICSY01000001-ICSY01046013 (46013 entries)
6. Joint research with: Rakuno Gakuen University; Toyohashi Zoo and Botanical Park

Okinawa Rail

1. Scientific name: Gallirallus okinawae
2. Download genome data in FASTA format (ZIP: 327MB)
3. Genome DDBJ accession number: BDFH02000001-BDFH02041622 (41622 entries)
4. Download mRNA data in FASTA format (ZIP: 6MB)
5. mRNA DDBJ accession number: ICPP01000001-ICPP01012819 (12819 entries)
6. Joint research with: Rakuno Gakuen University

Okinawa Woodpecker

1. Scientific name: Dendrocopos noguchii
2. Download genome data in FASTA format (ZIP: 316MB)
3. Genome DDBJ accession number: BJBY01000001-BJBY01154720 (154720 entries)
4. Joint research with: Rakuno Gakuen University

Peregrine Falcon

1. Scientific name: Falco peregrinus
2. Download genome data in FASTA format (ZIP: 335MB)
3. Genome DDBJ accession number: BJEV01000001-BJEV01026817 (26817 entries)
4. Download mRNA data in FASTA format (ZIP: 13 MB)
5. DDBJ accession number: ICSV01000001-ICSV01052227 (52227 entries)
6. Joint research with: Rakuno Gakuen University; Gifu University

Red-crowned Crane

1. Scientific name: Grus japonensis
2. Download genome data in FASTA format (ZIP: 348MB)
3. Genome DDBJ accession number: BDFG02000001-BDFG02044166 (44166 entries)
4. Download mRNA data in FASTA format (ZIP: 7MB)
5. mRNA DDBJ accession number: ICSF01000001-ICSF01013228 (13228 entries)
6. Joint research with: Rakuno Gakuen University

Red-headed Wood Pigeon

1. Scientific name: Columba janthina nitens
2. Download genome data in FASTA format (ZIP: 328MB)
3. Genome DDBJ accession number: BMBC01000001-BMBC01015508 (15508 entries)
4. Joint research with: Rakuno Gakuen University

Short-tailed Albatross

1. Scientific name: Phoebastria albatrus
2. Download genome data in FASTA format (ZIP: 331MB)
3. Genome DDBJ accession number: BMBH01000001-BMBH01023454 (23454 entries)
4. Joint research with: Rakuno Gakuen University; College of Bioresource Sciences, Nihon University

Sparrowhawk

1. Scientific name: Accipiter nisus
2. Download genome data in FASTA format (ZIP: 337MB)
3. Genome DDBJ accession number: BJBX01000001-BJBX01044975 (44975 entries)
4. Joint research with: Rakuno Gakuen University

Steller's Sea Eagle

1. Scientific name: Haliaeetus pelagicus
2. Download genome data in FASTA format (ZIP: 334MB)
3. Genome DDBJ accession number: BMBF01000001-BMBF01014266 (14266 entries)
4. Joint research with: Rakuno Gakuen University; Institute for Raptor Biomedicine Japan

Tufted Puffin

1. Scientific name: Fratercula cirrhata
2. Download genome data in FASTA format (ZIP: 313MB)
3. Genome DDBJ accession number: BMBE01000001-BMBE01033379 (33379 entries)
4. Joint research with: Rakuno Gakuen University

White-necked Crane

1. Scientific name: Grus vipio
2. Download genome data in FASTA format (ZIP: 335MB)
3. Genome DDBJ accession number: BJEU01000001-BJEU01051019 (51019 entries)
4. Download mRNA data in FASTA format (ZIP: 14 MB)
5. DDBJ accession number: ICSW01000001-ICSW01056920 (56920 entries)
6. Joint research with: Rakuno Gakuen University; Kagoshima University

White-tailed Eagle

1. Scientific name: Haliaeetus albicilla
2. Download genome data in FASTA format (ZIP: 339MB)
3. Genome DDBJ accession number: BJBZ01000001-BJBZ01035313 (35313 entries)
4. Joint research with: Rakuno Gakuen University

Whooper Swan

1. Scientific name: Cygnus cygnus
2. Download genome data in FASTA format (ZIP: 297MB)
3. Genome DDBJ accession number: BMBB01000001-BMBB01025888 (25888 entries)
4. Joint research with: Rakuno Gakuen University; Institute for Raptor Biomedicine Japan

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Mammals

• Bonin Flying Fox
• Bush Dog
• Dugong
• Indian One-horned Rhinoceros
• Iriomote Cat
• Japanese Black Bear
• Tsushima Leopard Cat

Bonin Flying Fox

1. Scientific name: Pteropus pselaphon
2. Download genome data in FASTA format (ZIP: 547MB)
3. Genome DDBJ accession number: BMBI01000001-BMBI01007513 (7513 entries)
4. Joint research with: Rakuno Gakuen University; NPO Corporation Doubutsutachi no Byouin Okinawa

Bush Dog

1. Scientific name: Speothos venaticus
2. Download genome data in FASTA format (ZIP: 690MB)
3. Genome DDBJ accession number: BLYH01000001-BLYH01052603 (52603 entries)
4. Joint research with: Wildlife Research Center of Kyoto University; Rakuno Gakuen University

Dugong

1. Scientific name: Dugong dugon
2. Download genome data in FASTA format (ZIP: 740MB)
3. Genome DDBJ accession number: BMBL01000001-BMBL01116852 (116852 entries)
4. Joint research with: Rakuno Gakuen University

Indian One-horned Rhinoceros

1. Scientific name: Rhinoceros unicornis
2. Download genome data in FASTA format (ZIP: 671MB)
3. Genome DDBJ accession number: BOSQ02000001-BOSQ02007615 (7615 entries)
4. Joint research with: Rakuno Gakuen University; Preservation and Research Center, City of Yokohama

Iriomote Cat

1. Scientific name: Prionailurus iriomotensis
2. Download genome data in FASTA format (ZIP: 667MB)
3. Genome DDBJ accession number: BOSP01000001-BOSP01057170 (57170 entries)
4. Joint research with: Rakuno Gakuen University

Japanese Black Bear

1. Scientific name: Ursus thibetanus japonicus
2. Download genome data in FASTA format (ZIP: 624MB)
3. Genome DDBJ accession number: BMBK01000001-BMBK01035282 (35282 entries)
4. Joint research with: Rakuno Gakuen University; Shikoku Institute of Natural History

Tsushima Leopard Cat

1. Scientific name: Prionailurus bengalensis euptilurus
2. Download genome data in FASTA format (ZIP: 769MB)
3. Genome DDBJ accession number: BIMV02000001-BIMV02049228 (49228 entries)
4. Joint research with: Kyoto City Zoo; Wildlife Research Center of Kyoto University; Rakuno Gakuen University

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Fish

• NIES Medaka
• NIES Zebrafish

NIES Medaka

1. * Data on a lineage provided by NIES as test standard organisms for Chemical Substance Control Law.
2. Scientific name: Oryzias latipes
3. Download genome data of NIES Medaka in FASTA format (ZIP: 196MB)
4. DDBJ accession number: BTXU01000001-BTXU01000025 (25 entries)
5. Reference genome data in FASTA format
6. GFF file of the reference genome data
7. Download a VCF file that records the mutations between the reference genome and NIES medaka (GZIP: 1.40GB)
8. Download a list of the mutations between the reference genome and NIES medaka in a tab-delimited file (GZIP: 435MB)

NIES Zebrafish

1. * Data on a lineage provided by NIES as test standard organisms for Chemical Substance Control Law.
2. Scientific name: Danio rerio
3. Download genome data of NIES Zebrafish in FASTA format (ZIP: 347MB)
4. DDBJ accession number: BTXV01000001-BTXV01000026 (26 entries)
5. Reference genome data in FASTA format
6. GFF file of the reference genome data
7. Download a VCF file that records the mutations between the reference genome and NIES zebrafish (GZIP: 1.13GB)
8. Download a list of the mutations between the reference genome and NIES zebrafish in a tab-delimited file (GZIP: 1.12GB)

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Others

• NIES Large water flea

NIES Large water flea

1. * Data on a lineage provided by NIES as test standard organisms for Chemical Substance Control Law. Data acquired at the National Institute for Environmental Studies was mapped against the reference genome.
2. Scientific name: Daphnia magna
3. Download genome data of NIES Large water flea in FASTA format (ZIP: 43MB)
4. Download genome data of NIES Large water flea in BAM format (ZIP: 5.1GB)
5. [md5 for NIES_Daphnia_magna.bam] 6ea56391697a1904a788f13cdf72d1af
6. Reference genome data in FASTA format
7. GTF file of the reference genome data
8. Download a VCF file that records the mutations between the reference genome and NIES Large water flea (ZIP: 42MB)
9. Download a list of the mutations between the reference genome and NIES Large water flea in a tab-delimited file (ZIP: 41MB)